Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01634 ATGGCGATTCCCATTCCCAGCCGACAGCTGTTCATCGACGGCGAGTGGAGGGAACCAGTCCTCAAGAACCGCATCCCCATCATCAACCCCACTACTGAAGAAACAATCGGATCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCTCGAAAAGCACTTGCGAGGAATAAAGGCAAAGATTGGGCCTCTGCTCCGGGAGCTCATCGTGCCAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCAAAACTTGAAGCAATAGACTGTGGAAAACCTCTGGAAGAAGCTGCATGGGACATGGTATGGCAATTACTTAAAGATGATGTTGCTGGGTGCTTCGAGTACTATGCAGATCTTGCCGAAGGGTTGGATGCAAAGCAAAAAGCTCCTGTTTCTCTTCCCATGGATACATTCAAGAGCTATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGTCTACATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATCCTGAAGCCATCAGAACTGGCATCTGTCACCTCTTTGGAATTGGGCGAAATCTGTAAAGATGTTGGTCTTCCATCTGGTGTTTTGAATATTCTGACAGGATTTGGCCCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCACGTTGACAAGATTGCATTTACTGGGAGTGGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGAAAAAGTCCAATTGTTGTTTTTGATGATGTCGACCTTGACAAGGCTGCCGAATGGACAGCATTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGTCTACTTGTACATGAAAACATTGCTGATGAATTCTTGGATAGGCTCGTGAAATGGTGCCAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCAGGACAGTATGAGAAAATATTGAAGTTTGTCTCAACTGCTGAGCACGAAGGCGCAAAGATTCTATATGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTTGTTGAACCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAAAGAAGAAGTCTTTGGACCTGTTCTGTGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATCGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAATGATTTAGAAAGGTGTGATCGCGTAGCCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAGCTAGGGGAATGGGGACTTGATAATTATCTAACTGTAAAGCAGGTTACTCAATATATATCCGACGAACCATGGGGATGGTACAAATCTCCTTCTAAACTGTAA 1530 45.1 MAIPIPSRQLFIDGEWREPVLKNRIPIINPTTEETIGSIPAATAEDVELAVDAARKALARNKGKDWASAPGAHRAKYLRAIAAKITERKSELAKLEAIDCGKPLEEAAWDMVWQLLKDDVAGCFEYYADLAEGLDAKQKAPVSLPMDTFKSYVLKEPIGVVGLITPWNYPLLMSTWKVAPALAAGCAAILKPSELASVTSLELGEICKDVGLPSGVLNILTGFGPEAGAPLASHPHVDKIAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHENIADEFLDRLVKWCQNIKISDPLEEGCRLGPVVSAGQYEKILKFVSTAEHEGAKILYGGVRPKHLKKGYFVEPAIITNVTTSMQIWKEEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCDRVAKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTQYISDEPWGWYKSPSKL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29857602 29862956 - ClCG06G016680.2 Cla06g01634 275826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01634 509 CDD ALDH_F10_BADH 27 493 - -
Cla06g01634 509 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 506 - -
Cla06g01634 509 SUPERFAMILY ALDH-like 5 495 IPR016161 GO:0016491
Cla06g01634 509 Pfam Aldehyde dehydrogenase family 17 491 IPR015590 GO:0016491
Cla06g01634 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 464 IPR016163 GO:0016620
Cla06g01634 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 489 IPR016162 GO:0016491
Cla06g01634 509 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 506 - -
Cla06g01634 509 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 293 304 IPR016160 GO:0016491
Cla06g01634 509 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 265 272 IPR029510 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01634 Cla-Chr6:29857602 Cla06g01654 Cla-Chr6:30056618 5.58E-118 dispersed
Cla11g01542 Cla-Chr11:29112558 Cla06g01634 Cla-Chr6:29857602 3.25E-21 dispersed
Cla06g01634 Cla-Chr6:29857602 Cla02g01637 Cla-Chr2:31170876 1.23E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01634 K00130 - csv:101213657 949.118