Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01634 ATGGCGATTCCCATTCCCAGCCGACAGCTGTTCATCGACGGCGAGTGGAGGGAACCAGTCCTCAAGAACCGCATCCCCATCATCAACCCCACTACTGAAGAAACAATCGGATCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCTCGAAAAGCACTTGCGAGGAATAAAGGCAAAGATTGGGCCTCTGCTCCGGGAGCTCATCGTGCCAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCAAAACTTGAAGCAATAGACTGTGGAAAACCTCTGGAAGAAGCTGCATGGGACATGGTATGGCAATTACTTAAAGATGATGTTGCTGGGTGCTTCGAGTACTATGCAGATCTTGCCGAAGGGTTGGATGCAAAGCAAAAAGCTCCTGTTTCTCTTCCCATGGATACATTCAAGAGCTATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGTCTACATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATCCTGAAGCCATCAGAACTGGCATCTGTCACCTCTTTGGAATTGGGCGAAATCTGTAAAGATGTTGGTCTTCCATCTGGTGTTTTGAATATTCTGACAGGATTTGGCCCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCACGTTGACAAGATTGCATTTACTGGGAGTGGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGAAAAAGTCCAATTGTTGTTTTTGATGATGTCGACCTTGACAAGGCTGCCGAATGGACAGCATTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGTCTACTTGTACATGAAAACATTGCTGATGAATTCTTGGATAGGCTCGTGAAATGGTGCCAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCAGGACAGTATGAGAAAATATTGAAGTTTGTCTCAACTGCTGAGCACGAAGGCGCAAAGATTCTATATGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTTGTTGAACCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAAAGAAGAAGTCTTTGGACCTGTTCTGTGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATCGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAATGATTTAGAAAGGTGTGATCGCGTAGCCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAGCTAGGGGAATGGGGACTTGATAATTATCTAACTGTAAAGCAGGTTACTCAATATATATCCGACGAACCATGGGGATGGTACAAATCTCCTTCTAAACTGTAA 1530 45.1 MAIPIPSRQLFIDGEWREPVLKNRIPIINPTTEETIGSIPAATAEDVELAVDAARKALARNKGKDWASAPGAHRAKYLRAIAAKITERKSELAKLEAIDCGKPLEEAAWDMVWQLLKDDVAGCFEYYADLAEGLDAKQKAPVSLPMDTFKSYVLKEPIGVVGLITPWNYPLLMSTWKVAPALAAGCAAILKPSELASVTSLELGEICKDVGLPSGVLNILTGFGPEAGAPLASHPHVDKIAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHENIADEFLDRLVKWCQNIKISDPLEEGCRLGPVVSAGQYEKILKFVSTAEHEGAKILYGGVRPKHLKKGYFVEPAIITNVTTSMQIWKEEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCDRVAKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTQYISDEPWGWYKSPSKL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29857602 29862956 - ClCG06G016680.2 Cla06g01634 275826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01634 509 CDD ALDH_F10_BADH 27 493 - -
Cla06g01634 509 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 506 - -
Cla06g01634 509 SUPERFAMILY ALDH-like 5 495 IPR016161 GO:0016491
Cla06g01634 509 Pfam Aldehyde dehydrogenase family 17 491 IPR015590 GO:0016491
Cla06g01634 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 464 IPR016163 GO:0016620
Cla06g01634 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 489 IPR016162 GO:0016491
Cla06g01634 509 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 506 - -
Cla06g01634 509 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 293 304 IPR016160 GO:0016491
Cla06g01634 509 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 265 272 IPR029510 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01634 K00130 betB, gbsA; betaine-aldehyde dehydrogenase [EC:1.2.1.8] - csv:101213657 949.118
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01634 Cla-Chr6:29857602 Cla06g01654 Cla-Chr6:30056618 5.58E-118 dispersed
Cla11g01542 Cla-Chr11:29112558 Cla06g01634 Cla-Chr6:29857602 3.25E-21 dispersed
Cla06g01634 Cla-Chr6:29857602 Cla02g01637 Cla-Chr2:31170876 1.23E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g684 . . Bda06g00575 . Bpe12g00577 . . . . . Cma10g00151 . Car10g00142 . . . . . . . . . . . Cla06g01634 Cam06g1817 Cec06g1867 Cco06g1872 Clacu06g1775 Cmu06g1717 Cre06g2537 . . . . . . . . Blo13g00042 Blo15g00282 . . Bpe07g00817 . . Bma08g00185 . Cmo10g00162 . . . . . . Cpe18g00825 . . . . . . . . . . . . . . Lsi06g01516 Csa01g00183 Chy02g02550 Cme02g01936
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g01016 . 1 505 Aldehyde Dehydrogenase Gene Family AT3G24503 69.4 1.6e-210 729.2
Cla06g01654 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 2.3e-153 539.3
Cla02g01637 . 245 714 Aldehyde Dehydrogenase Gene Family AT3G24503 52.9 2.6e-149 525.8
Cla06g01654 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 2.2e-250 861.7
Cla02g01637 . 211 714 Aldehyde Dehydrogenase Gene Family AT3G48000 72.9 5.1e-231 797.3
Cla06g01016 . 18 505 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 3.2e-161 565.5
Cla06g01654 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 6.2e-165 577.4
Cla02g01637 . 225 564 Aldehyde Dehydrogenase Gene Family AT1G23800 75.6 1.8e-156 549.3
Cla06g01016 . 18 349 Aldehyde Dehydrogenase Gene Family AT1G23800 54.5 1.5e-102 370.2
Cla11g01542 . 613 1071 Aldehyde Dehydrogenase Gene Family AT4G34240 60.3 2.4e-164 575.9
Cla11g01542 . 678 1069 Aldehyde Dehydrogenase Gene Family AT1G44170 68.1 1.3e-162 569.7
Cla02g02255 . 62 455 Aldehyde Dehydrogenase Gene Family AT1G44170 50.3 1.4e-111 400.2
Cla07g00849 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 7.1e-184 640.6
Cla02g02255 . 2 457 Aldehyde Dehydrogenase Gene Family AT4G36250 54.9 5.5e-152 534.6
Cla02g01832 . 46 614 Aldehyde Dehydrogenase Gene Family AT1G79440 55.3 3.8e-162 568.5
Cla09g01595 . 5 505 Aldehyde Dehydrogenase Gene Family AT2G14170 75.7 1.6e-222 769.2
Cla01g01786 . 262 696 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.4e-181 632.5
Cla06g01634 . 1 507 Aldehyde Dehydrogenase Gene Family AT1G74920 80.9 7.7e-250 859.8
Cla06g01634 . 1 509 Aldehyde Dehydrogenase Gene Family AT3G48170 80.7 1.1e-251 865.9
Cla02g01678 . 46 558 Aldehyde Dehydrogenase Gene Family AT2G24270 87.7 6.5e-265 909.8
Cla01g01428 . 21 576 Aldehyde Dehydrogenase Gene Family AT5G62530 75.0 4.3e-257 884.0
Cla06g00431 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.2e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007146 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01634 Cla_Chr06 FPKM 4.092006 4.433644 7.791771 6.56364 4.816149 3.316679 5.203208 5.212407 4.707119 6.273242