Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01635 ATGGCTTCCCCCTTTTCTTCCACTTTCCTTATCTTCCTTTCAATATTCGCCGCCTTCTCCACTTCCCAGTCGTCGACGATCGGAGTCGGATACATTTCGCGGCTTCTTGAAATTCAGGATCGCGAGAGGGCGCCTGCACATGTCCAAGTTGCTGCGGCTCGTGAAGTTCTTCGTCGGCTTCTTCCTTTTCACCTCTCTAGCTTTGACTTTCAAATTGTGTCTAAGGTCAAATGTGGTGGAGAATCTTGCTTTGTGATCAGGAACCATCGCGCGTTCAGGAAACCCGGGGATCCTGAGATTTTAATCGCTGGGGTCACTGGAGTGGAGATTTTAGCTGGCTTGCATTGGTATCTTAAGCACTGGTGTGGTGCCCACATATCTTGGGAAAAAACAGGTGGCTCACAACTATTTTCTGTACCTAAGGCCGGCCTGTTACCTCGTATTCAAACAGACGAAATTGTGATTCAGAGGCCTATTCCTTTGAACTACTATCAAAATGCAGTTACATCAAGCTACTCTTTTGCCTGGTGGGACTGGAAAAGATGGGAAAAGGAAATAGACTGGATGGCTCTTCAGGGAATCAATATGCCTCTAGCATTTACTGGGCAGGAGGCTATCTGGCGAAAAGTATTCCAGAAATTTAACATAAGCAACTCAGATTTGGATGATTTCTTTGGAGGTCCAGCATTTCTTGCATGGTCACGCATGGGAAATTTGCACAAATGGGGTGGGCCACTGCCGCAAAGTTGGTTTGATCAACAGCTTATTCTGCAGAAAAAAGTTATTGGCAGAATGTTTGAGCTAGGAATGACTCCCGTTTTGCCAGCCTTTTCGGGTAATATTCCTGCTGCTTTCAAACAAATATATCCATCAGCAAAAATAACACGCTTGGGAAATTGGTTTTCTGTTCACAGTGACCCTAGATGGTGCTGCACTTACCTTCTTGATGCCATGGACCCATTATTTGTCGAGATTGGCAAAGCATTTATTGAGCAACAACAGAAAGAATATGGAAGAACTTCCCACGTATACAATTGGTATGGTACTCGTTTCCTCAATCAGACTTTGTATTGTGGGTGGTTCATTTTTCTTTTAATTTTCATTGTAAGATGTGTATGGTCAGCTTTGTTACATCAGAATGGCAGAAAAGCACACCAGAACAAGCATTTAAAATTGGTGCAATATTGGTTTCAACAGTCTTTAAATTGTCTGTTCTTCAAACATCAGAAATATCTGCCATCAAATTTTTACATCATGAACATCTTTTCACCCTACAGTGATACCTTTGATGAGAACACTCCACCCGTTGATGAGGTGGAATACATCTCTTCATTAGGTGCAGCTATTTTTGGAGGAATGTGGGCAGGGGATTCTAATGCTGTTTGGCTAATGCAGGGGTGGATGTTTTCATATGATCCATTCTGGAGGCCTCCACAAATGAAGGCCCTTTTACATTCTGTGCCACTGGGAAGGCTGGTGGTTCTTGATCTGTATGCTGAAGTGAAACCGATCTGGATATCTTCTGAGCAATTTTATGGCACTCCTTACATCTGGAAAGTCTTTATGTCCATTCTTTTGCTCGATCTTAATAACAGACATCCTAAGTTCATTAGTTCAAAGTGTATGCTACATAACTTTGCTGGAAATGTGGAGATGTATGGCATTTTAGATTCAATAGCATCTGGACCAATTGAAGCTTGTGCTAGTCCATACTCGACAATGGTGGGGGTAGGAATGTCCATGGAAGGAATTGAACAGAATCCTGTTGTCTACGATCTTATGTCTGAAATGGCTTTTCAACACAGCAAAGTTGATGTCAAGAAATGGCTTTATCAGTATTCAATGAGGCGTTATGGTCATTTAGTCCCTTCAATACAAGATGCCTGGGATGTATTATATCACACCATCTACAACTGCACTGATGGTGCCTATGACAAAAACAGGGACGTCATTGTGGCATTTCCAGATGTTGATCCATCGTCAATCTTGGTATTACCTGAGGGGTCTGAACAACATGGGAACTTGGACTCAAGTGTAGATAGCCTCCACCTCCGGGATGCAACGTTTGACCGACCTCATCTTTGGTATCCTACTTCTGAAGTAATTCGTGCACTCAAGCTTTTCATTGCCGGCGGTGATGAACTTTCTGGTAGCAACACTTACAGGTATGACCTTGTGGATTTGACCAGGCAAGCTCTAGCCAAATACTCGAATAATCTATTCTTTAGAATTGTCAAAGCATATCAGTTACATGATGCGCAAACAATGGTCAGCTTAAGCCAAGAGTTCCTTGAACTTGTCAATGATATCGACACATTATTGGCTTGTCACGAGGGATTTCTTCTGGGACCTTGGCTACAAAGCGCTAAGAAACTCGCCCAAAACGAAGAGGAGGAAAAACAGTATGAGTGGAATGCAAGAACTCAAATAACCATGTGGTTTGACAACACAGAGGAAGAAGCAAGTTTACTTCGTGACTATGGAAACAAGTACTGGAGTGGACTCTTGGGCGATTACTACGGTCCTCGAGCTGCGATATACTTCAAGTTCTTGAAAGAAAGTTCAGAGAATGGATACAGATTTCAATTGAGTAATTGGAGGAGAGAGTGGATAAAGCTAACAAATGATTGGCAAAGCAGAAGAAAGATTTACCCTGTGGAAAGCAATGGCGATGCACTTGACACATCCCGCTGGCTCTACTACAAATACTTGCAAATACTTGAAAGCTATTCTTCATCTTCACCCTCCTCAGATTTCTCTGCAGCAGACCCCAAATCAATCAAATCCATGGCTGGAAACGGCTCTTACGATTGGGCGGACCAGTGGGACTACAACGACTCCACGGACATAGCCACAGAGAACAAGAAGAAGACCGGCGGCGGAAACAGTACGGCCAAATACAAGCAGAAAGTCGGCGAAGGGCTTGGGAAGACCAAAGCTGTCGCCTCTAATGGCGTCAAAAAGGTTAAAGAAGGAACCTCTCTTGGCTTCCAATGGATTAAAGATAAATATAACAAAACCACTCATAAGAAGTAG 3036 43.15 MASPFSSTFLIFLSIFAAFSTSQSSTIGVGYISRLLEIQDRERAPAHVQVAAAREVLRRLLPFHLSSFDFQIVSKVKCGGESCFVIRNHRAFRKPGDPEILIAGVTGVEILAGLHWYLKHWCGAHISWEKTGGSQLFSVPKAGLLPRIQTDEIVIQRPIPLNYYQNAVTSSYSFAWWDWKRWEKEIDWMALQGINMPLAFTGQEAIWRKVFQKFNISNSDLDDFFGGPAFLAWSRMGNLHKWGGPLPQSWFDQQLILQKKVIGRMFELGMTPVLPAFSGNIPAAFKQIYPSAKITRLGNWFSVHSDPRWCCTYLLDAMDPLFVEIGKAFIEQQQKEYGRTSHVYNWYGTRFLNQTLYCGWFIFLLIFIVRCVWSALLHQNGRKAHQNKHLKLVQYWFQQSLNCLFFKHQKYLPSNFYIMNIFSPYSDTFDENTPPVDEVEYISSLGAAIFGGMWAGDSNAVWLMQGWMFSYDPFWRPPQMKALLHSVPLGRLVVLDLYAEVKPIWISSEQFYGTPYIWKVFMSILLLDLNNRHPKFISSKCMLHNFAGNVEMYGILDSIASGPIEACASPYSTMVGVGMSMEGIEQNPVVYDLMSEMAFQHSKVDVKKWLYQYSMRRYGHLVPSIQDAWDVLYHTIYNCTDGAYDKNRDVIVAFPDVDPSSILVLPEGSEQHGNLDSSVDSLHLRDATFDRPHLWYPTSEVIRALKLFIAGGDELSGSNTYRYDLVDLTRQALAKYSNNLFFRIVKAYQLHDAQTMVSLSQEFLELVNDIDTLLACHEGFLLGPWLQSAKKLAQNEEEEKQYEWNARTQITMWFDNTEEEASLLRDYGNKYWSGLLGDYYGPRAAIYFKFLKESSENGYRFQLSNWRREWIKLTNDWQSRRKIYPVESNGDALDTSRWLYYKYLQILESYSSSSPSSDFSAADPKSIKSMAGNGSYDWADQWDYNDSTDIATENKKKTGGGNSTAKYKQKVGEGLGKTKAVASNGVKKVKEGTSLGFQWIKDKYNKTTHKK 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29867960 29879502 - ClCG06G016690.2 Cla06g01635 275827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01635 1011 Gene3D - 27 151 IPR029018 -
Cla06g01635 1011 PANTHER ALPHA-N-ACETYLGLUCOSAMINIDASE 48 905 IPR007781 -
Cla06g01635 1011 Pfam Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain 51 145 IPR024240 -
Cla06g01635 1011 Gene3D - 603 912 - -
Cla06g01635 1011 Pfam Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain 420 520 IPR024733 -
Cla06g01635 1011 Pfam Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain 163 345 IPR024733 -
Cla06g01635 1011 Pfam Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain 541 600 IPR024733 -
Cla06g01635 1011 Pfam Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain 609 901 IPR024732 -
Cla06g01635 1011 Gene3D Glycosidases 158 601 - -
Cla06g01635 1011 PANTHER ALPHA-N-ACETYLGLUCOSAMINIDASE 48 905 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01635 K01205 NAGLU; alpha-N-acetylglucosaminidase [EC:3.2.1.50] - dct:110114091 880.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01635 Cla-Chr6:29867960 Cla09g00356 Cla-Chr9:3490496 4.75E-131 dispersed
Cla06g01635 Cla-Chr6:29867960 Cla02g00861 Cla-Chr2:12034623 3.65E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g686 . . . . Bpe12g00578 . . . . . . . . Car11g00115 Sed08g0166 . Cpe04g01535 Bhi02g00394 Tan09g2200 Cmetu02g0643 . Hepe09g0169 . . Cla06g01635 Cam06g1818 Cec06g1868 Cco06g1874 Clacu06g1776 Cmu06g1718 Cre06g2538 . . . Cone19ag0121 . . . . . . . . . . . Bma08g00184 . . Cmo11g00122 . . . . . . . . . . . . . . . . . . . . Lsi06g01519 Csa01g00181 Chy02g02551 Cme02g01938
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002283 1 4 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01635 Cla_Chr06 FPKM 23.672379 24.396162 25.4809 24.455387 19.888029 20.711369 17.546785 16.029434 15.188704 15.8523