Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01636 ATGGGCGCCAATGGCAAGTTCCGGTGGAAATTCCCCTTCCCTCACCGTCGTAATTCTAGGCTTGAATCGAACCAGCCTCCTAAAGAGTTCATTTGTCCAGTTTCTGGTTCGTTAATGGCGGACCCTGTCGTCGTCTCTTCTGGACAGACGTTTGAGCGTGTTTCTGCGCAGGTTTGCAGAAATTTAGGGTTCTCTCCTGTGTTAGAGGATGGTTCGAAGCCAGATTTCACTACTGTGATTCCGAATTTAGCTATGAAGAAGACGATTCTCCATTGGTGTGAGAAATCTGGTGCTCGGAATCTTCAGCCGCCTGATTACACCTCCGTTGAGAGCCTTGTTGCTGCATTGATGGAGAAGGAGAAGCCCCAAGCCGGAATTAGGGATTCCTCGGATAGGGATTTGTTAAAGAGAGTATCGGATTTGCCGCCGGTGAATTTTTCGCATGCTGCGACGGAGTATGGTCATCGTCCAGAACATTTCTACAGCAGCTCGTCGGAGGAATCGGTCATCGTCGGAGGAAGTCCGGGAACTCCTCTGCCGTTCACGACTCGACCTGCTTGTTATTATTCATTTTCGTCTTCTTCCTCTGAAACCGTGGAAAACGAAGTGCTCATCCAAACCCTAGGCCCTAATTCATCGATTTCCGAAGATGAGAAGAATTTTTTATCGAAGCTTGAGAGTCCCGATGTGTTTCAGCAAGAAGAAGGCGTTATTTCGCTAAGAAAAATCACGAAAACCAATGAGAATATTAGGGTTTCGCTCTGTACGCCTCGGATTCTTTTCTCTCTCCACCGATTGGTAACGTCGAGATATCCCAAAGTACAAATCAACGCCGTCGCCTCTCTGGTAAATCTCTCCCTCGAAAAGCCGAACAAACTGAAGATCGCGCGGTCGGGATTGGTTCCACACTTAATCGATGTGCTAAAAGGAGGACATACCGAAGCGCAAGAACACGCCGCCGGCGCGCTCTTCAGCCTAGCTTTAGAGGATGAAAATCGGATGGCGATCGGAGTTCTCGGCGCACTGCCGCCACTCCTTTACGCACTCCGATCGGAAAGCGAGCGAACTCGAGACGATTCCGCTCTGTGTCTCTACAACCTGACAATGATTCAGAGCAACCGAGTGAAGCTTGTGAAACTCGGCGCCGTAACCACTCTACTTTCCATGGTGAAATCAAGAAACTCGACGAATCGGCTGCTACTGATCCTCTGCAACATCGCCGTGTGTCAGGAGGGAAGGTCGGCAATGCTGGACGCCGACGCCGTCGCGCTTTTGGTCGAAATGCTGAGGGAGAAAGAGCTAAACTCCGAATCAACCCGCGAGAATTGCGTTGCGGCATTGTACGCTCTGAGCTATGGAAGCATGAGATTCAAAGGATTAGCGAAGGATGCCGGAGCGATAGAGGTTTTGATAGAGATTGTTGAAAGAGGAAGCGAGAGAGCGAGAGAGAAGGCGAAGAAGATATCGGAGAGGATGAGAACGAGAGGGAGATTCGATGAAGACGACGACGAAGAAGACGATCGTGGAGGCGAGTCGAGTTTTGAGAGAGGTGGACTCAGTTCGACTCGGTACCGAATCGGAGGTGGAAAATTTCCCAGCTCGGCTAATACGGTGCCGTTTTGA 1623 50.15 MGANGKFRWKFPFPHRRNSRLESNQPPKEFICPVSGSLMADPVVVSSGQTFERVSAQVCRNLGFSPVLEDGSKPDFTTVIPNLAMKKTILHWCEKSGARNLQPPDYTSVESLVAALMEKEKPQAGIRDSSDRDLLKRVSDLPPVNFSHAATEYGHRPEHFYSSSSEESVIVGGSPGTPLPFTTRPACYYSFSSSSSETVENEVLIQTLGPNSSISEDEKNFLSKLESPDVFQQEEGVISLRKITKTNENIRVSLCTPRILFSLHRLVTSRYPKVQINAVASLVNLSLEKPNKLKIARSGLVPHLIDVLKGGHTEAQEHAAGALFSLALEDENRMAIGVLGALPPLLYALRSESERTRDDSALCLYNLTMIQSNRVKLVKLGAVTTLLSMVKSRNSTNRLLLILCNIAVCQEGRSAMLDADAVALLVEMLREKELNSESTRENCVAALYALSYGSMRFKGLAKDAGAIEVLIEIVERGSERAREKAKKISERMRTRGRFDEDDDEEDDRGGESSFERGGLSSTRYRIGGGKFPSSANTVPF 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29881997 29883619 - ClCG06G016710.1 Cla06g01636 275828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01636 540 Pfam U-box domain 27 95 IPR003613 GO:0004842|GO:0016567
Cla06g01636 540 Pfam Armadillo/beta-catenin-like repeat 330 368 IPR000225 GO:0005515
Cla06g01636 540 Pfam Armadillo/beta-catenin-like repeat 290 327 IPR000225 GO:0005515
Cla06g01636 540 MobiDBLite consensus disorder prediction 482 540 - -
Cla06g01636 540 SMART arm_5 329 369 IPR000225 GO:0005515
Cla06g01636 540 SMART arm_5 288 328 IPR000225 GO:0005515
Cla06g01636 540 SMART arm_5 409 452 IPR000225 GO:0005515
Cla06g01636 540 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Cla06g01636 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 98 IPR013083 -
Cla06g01636 540 SUPERFAMILY ARM repeat 220 485 IPR016024 -
Cla06g01636 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 299 336 IPR000225 GO:0005515
Cla06g01636 540 PANTHER U BOX DOMAIN-CONTAINING 1 529 - -
Cla06g01636 540 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Cla06g01636 540 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 529 - -
Cla06g01636 540 MobiDBLite consensus disorder prediction 482 499 - -
Cla06g01636 540 CDD RING-Ubox 31 67 - -
Cla06g01636 540 SUPERFAMILY RING/U-box 16 99 - -
Cla06g01636 540 Gene3D - 217 398 IPR011989 -
Cla06g01636 540 Gene3D - 399 503 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01636 Cla-Chr6:29881997 Cla07g00605 Cla-Chr7:11031387 1.74E-38 dispersed
Cla01g01396 Cla-Chr1:28374684 Cla06g01636 Cla-Chr6:29881997 1.33E-179 wgd
Cla06g01636 Cla-Chr6:29881997 Cla09g01823 Cla-Chr9:35880803 2.28E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01636 - - csv:101213423 901.738