Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01640 ATGTTGGTCTTTTTAGTTCATTGCAATCTTCGCCAATACCATCGCATCGTCTTGTATCTGTATGTCTTCTGGCCTCCTATGTTGTCGCAGAAAAGAAACCCAGATGATGGAGATGGTCCGGCGGATGGTGATAATCCCGATGATAAGCGTAGAAAGTTTTGTTTATGGAGCGTGGTTCGTGATGCCACATCATTGCAATCAATGCAACAACTATTGGAGCCAGTCATTCGTAAAGTGGTAAGGGAGGAGATTGAATCTGCACTAAGAAAGTACATTACCAATGTGCAAAGGAATGACGAGAATGATGGGAAAGAAATCTATTCTTCCGGGCCGAGATGCTTTCAATTGAAGTTTATAACTGATATTTCTCTCCCGGTATTTACTGGAGCTCGCATTGAAGGAAGAGATGGTTCCAGCTTGATGGTGGCTTTGGTTGACACCTTAACTGGGGAAGTTGTTGGCACTGGGTCTCAATCCTCAGCCAAAGTGGAAATTGTAGTGCTCGAGGGTGATTTTGAGGGTGGAAGTGATAGTTACACTGCAGAGGAGTTCAAGAATAACATTGTAAGAGAGAGGGAAGGGAAGAAACCACTTCTTACAGGAGATACATGTGTGAGTCTCAAAGATGGCATTGGTTTGGTAGGTGAGATTTCTTTCACTGACAATTCAAGCTGGACTAGAAGCCGTCGGTTCAGGCTCGGTGCAAGAATTATAGACGACAATGATGGAACGAGAATACTGGAAGCAAAGACTGCGTCATTTGTGGTCAGAGATCACCGTGGAGAATTGTACAAAAAGCACCACCCTCCATTTCTGCAGGATGAAGTATGGAGATTGCAGAAAATTAGCAAGGATGGAGCCTATCATAAGCGCCTGAGCCAAGAAAAAATTGAGACAGTGAAAGATTTCCTTACTCTGCTTTATATACAACCTTCAAGGCTTCGTAATATTCTTGGCCCTGGCATGTCTACGAAAATGTGGGAAACTACAATTGAGCATGCACAGACATGTGTGCTCGATCGGAAGATTTACGTCTACAATCCCCATGATTTGGAACAGAAAAGTGGAGTGGTCTTTAATGTTGTAGGACAAGTGATGGGGCTACTTTCAGATCACCAGTACGTTCCCATAGATAAGCTATCTGAAAGTGAAAAGGCTGATGCTCATAACTTGGTTATCTCTGCGTACAAACATTGGGAAGAAGTCAACTCCATTGATGATGAAACTTCTCTTGTGGGTGGCTCTTCTCACCCACTCAGTTTCCTTTACACCCCCAGCTCACCCATGGAGGACCATTATGGTAGCAAGTACTTGGCTTCTCCAAAATTTAGTGGCTTTGATTTCACACCATCAAATGTCTATTCGTCTGACATAATTTCATCGATGGGTTCTATTGGGAATCCTAGCAGCTTGGACGATCATGCTTTGCAGGGTTTTGATTCTATGGTTGTAAGATATGATCAGATACCAAGTTCCCCAAACTTTGCCAACTCTTCTCTGATCTGCGATTCCGAGCCACTAAACTCATCTTTCTTTGATGTGGATCATACGCAAGTCTTAGAGTCTGATTTGCAATGCAGCTCGATTTTAGAATCACGAGCAATTACAACAACTCTTCAAGGTGGCTCCTCATCATGTGGTGCTCAAATGAGATGGGCTAAATTATATGGTGTGCTAAAATGGTACATTTTGTTGAGGTTGGTAATTAGGAGAAACAAACGCGGGTTCGAGATATACAAAGGTATACAGGGTCACGGAAAGGAAAAATTGGACTAA 1776 42.91 MLVFLVHCNLRQYHRIVLYLYVFWPPMLSQKRNPDDGDGPADGDNPDDKRRKFCLWSVVRDATSLQSMQQLLEPVIRKVVREEIESALRKYITNVQRNDENDGKEIYSSGPRCFQLKFITDISLPVFTGARIEGRDGSSLMVALVDTLTGEVVGTGSQSSAKVEIVVLEGDFEGGSDSYTAEEFKNNIVREREGKKPLLTGDTCVSLKDGIGLVGEISFTDNSSWTRSRRFRLGARIIDDNDGTRILEAKTASFVVRDHRGELYKKHHPPFLQDEVWRLQKISKDGAYHKRLSQEKIETVKDFLTLLYIQPSRLRNILGPGMSTKMWETTIEHAQTCVLDRKIYVYNPHDLEQKSGVVFNVVGQVMGLLSDHQYVPIDKLSESEKADAHNLVISAYKHWEEVNSIDDETSLVGGSSHPLSFLYTPSSPMEDHYGSKYLASPKFSGFDFTPSNVYSSDIISSMGSIGNPSSLDDHALQGFDSMVVRYDQIPSSPNFANSSLICDSEPLNSSFFDVDHTQVLESDLQCSSILESRAITTTLQGGSSSCGAQMRWAKLYGVLKWYILLRLVIRRNKRGFEIYKGIQGHGKEKLD 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29911293 29919093 + ClCG06G016750.2 Cla06g01640 275832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01640 591 Pfam Calmodulin binding protein central domain 272 337 IPR046830 -
Cla06g01640 591 PANTHER OS02G0177800 PROTEIN 30 571 IPR012416 GO:0005516
Cla06g01640 591 PANTHER CALMODULIN-BINDING PROTEIN 60 A 30 571 - -
Cla06g01640 591 Pfam Calmodulin binding protein C-terminal domain 342 404 IPR046829 -
Cla06g01640 591 Pfam Calmodulin binding protein-like N-terminal domain 114 259 IPR046831 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01685 Cla-Chr3:32729990 Cla06g01640 Cla-Chr6:29911293 1.03E-51 dispersed
Cla03g01686 Cla-Chr3:32744844 Cla06g01640 Cla-Chr6:29911293 2.15E-35 dispersed
Cla06g01310 Cla-Chr6:26500235 Cla06g01640 Cla-Chr6:29911293 8.40E-110 dispersed
Cla06g01640 Cla-Chr6:29911293 Cla03g01668 Cla-Chr3:32550993 1.31E-49 dispersed
Cla06g01640 Cla-Chr6:29911293 Cla02g01494 Cla-Chr2:29458562 2.00E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01640 - - csv:101211405 1039.64