Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01645 ATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGGTGCTGCTGCTGCTGCTGCTGCTACAGCTAGGATGGGCTATAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCCGATGATGACAAACCTGTTGTATATGGTCGTAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTGAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGCCCGAACTGCCCGATCTGCCCGGGACTGCCCGGACTCGGCTCTCTACCAAGGCAGTATTTTGTATTGATCTAGGGTTTCTTAGTAAGCCGATAGCTTTGAATTGGCTTTCCTCTGTCCAATTAGGGTTAGGATTGATGGTACTCGTTCGGCGTGAAGGTGGGATCGAGGCTGGAATTGGGGAAAATGCTAGGCTATGCATGGGCGTCGAGGTGAGGACTGGAAACGGACTCGGCACATGTGGACAGTCCCCACACGTGGTTTGTTACCTAGTCCCTAGGTGTGTTTGCTTCACCAGGGCAGGATGTTTACGAGACTTGTTTCAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCCCAAGATTCCCCACCTTTTATTGGCATAATCCGGTGGTTGACGACTGGTAAGGAGAATAAGTTGAAGTTAGGTGTGAATTGGCTTTATCGATCTTCTGAACTAAAGCTTGGCAAAGGCATCCTTTTGGAAGCTGCGCCAAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTTCTTCCAAAGGACGTTGAACTTCCATCAGGGATTTCGTCATTTGTGTGTCGAAGAGTGTATGACATAACAAATAAGTGTTTATGGTGGCTAACCGATCAGGATTATATTAATGAGCGTCAGGAAGAAGTAGATCAATTGTTGTATAAGACAAGAATAGAAATGCATGCTTCTGTGCAACCCGGTGGTCGATCACCGAAGCCTACAAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAACCACTGCCTTTCCTTCTCACACAAAAGGCAAGAAAAGAGAAAGGAGTGACCAAGGATTAGAATCTGTCAAACGAGAACGCATCATCAAAGCTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAATATTTTGAAGTCGGAGATTGCAAAAGTTGCTGAAAAAGGAGGCTTGGTTGATTCTGAAGCTGTGGAGAAATTGGTGCAGCTTATGCTGACAGATAGAAATGACAAAAAAATTGATTTGGCTGGCAGATCAGCACTTGCAGGTGTGATAGCTGCCACAGATAAGGTTGAGTGCCTTAGTCAGTTTGTGCATCTTAAGGGTTTACCTGTACTTGATGAATGGCTCCAAGAGGTTCACAAGGGAAAAATTGGCAGTGGTGGTAGCCCCAAGGATAGCGACAAAGCAGTTGAGGAATTTCTCCTGGTTTTGCTTCGTGCCCTTGATAAACTACCTGTAAATCTTCCTGCTTTACAAATGTGCAACATTGGAAAGTCTGTGAATCATTTACGCTCGCATAAGAATTTGGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGTGTTGAAGCTGAAATGAATATTAATGATGCAAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGAACTCGTCCCTCTGAAGTTTCTCATGGAGGGAGGAATCAAGATGCATCCTCTGAAGTTGCCATGAAGAGCTCGGTTTCCCAGCTTTCTACATCCAAATCTGCTTCAGTTAAGCTTGCGCAGGATGACAGTGTTACCAGATCTGCATCTGCCTCTCCTGGTTCTATGAAACCAGTTTTATCACCTGCATCAGCAAGTATTAACTCGAAAGATGGTTCTTCCAGGAATCCGGGTGTTTGTGGCACAACTGATCTTGCTCAAACTATTGCCAGGGATGAAAAGAGTAGCAGTTCCAGTCAGTCCCACAATAATAGTCAATCTTGTTCTAGTGAACATGGTAAAAGTGGTGGTTTAGGGAAGGAGGATGCAAGAAGCTCTACTGCTGGTTCAATGAGTGTGAATAAGATCTCAGGTGGAGGATCTCGCCAGCGCAAGTCAGTTAATGGGTTTCCTGGTCCTGTTCTCTCTGGTGGTCAACGGGATGTAGGGTCGGGGAAAAGTTCTTTGCATAGAAACACAGTTTTGGAGAGATCATCACAGTCTGGAATGACTTTTGAAAAGGCATCTGATGGTCCTATTGCTGAGGGAAACAGTCCTAAATTGATAGTGAAGATCACCAATCGTGGCCGGAGTCCTGCACAGAGTGCTAGTGGAGGATCTTTTGAAGATCCTTCAACAATAAATAGCAGGGCTTCTTCTCCTCCACTTTCGGATAAACATGATCAACTTGATCACAGTAAGAGTGATACATGTCAACCTAATATTACTGGAGATGTGAATGCGGAGTCCTGGCAGAATAGTGATGTAAAAGATACAGTGATTGGTGCTGATGATGGTGATGGATCTCCTGCTGCTGTAAATGGTGATGAGTGCTGTCGGGCTGCAGAAGATGTAACAGTTTCAAAGGCTACTCCGTCATCATTAGCGAATGATCATAAGAATGGAAAGTTACATGAGGCTTCTTTCAGCTCCATAAATGCTTTAATTGAGAGCTGTATTAAATGCTCTGAAGCTAGTATGCCTACCTCACTCACGGATAATGTCGGAATGAATTTACTTGCTAGTGTAGCAGCTGTCGAGATGTCGAAGTCTGATTTTGTTTTGCCTTCCGATACTCAAGGAAATATGACTGCAGTGGACCGCTCTTCTAGAAGCAGTGATTATAAAGTTAAAGCATCTTGTCCTGAAGAGGATGCTAGAGATGACGTGCCGACGAATGATGCTATGGATGTTACTGAGCAGGGGCTGATCACCAGTTCCTTTGGAGGCAAAAATGTGGATGGAAGGTCTGTTTTGCAATCTGAAGAGAAACCGGTTGGAGATCTGAATGGTCATTCAAAATCTTCTGGTGTAAACTTGCAACAAACTGCTGTGGCGATGGCTGATGGGTGTATGAAAATGAACGAGGTTGGAGGCCCTGCCTCTCCCACTAGGATACCAGAGAAGGGTTTTGAGATCAAGGGGGCTAAACCAGTCAAGGACAGAAAGACGGCTGATGTAGTAGATGGAGAGAGCAGCCCAGAATCGAAACCAAAACCAAGCAGTTCTTTTCCTGATGGTGGCATAGTTGGTGATGGTATCTCGACTCGGGAAGTTGAAATGGATGTTCTTGATGAGCCTTTGCATCGGCGGCAAGACGTTGATGGCAATACCAATAATAGGCTGAATGGTATTAGTACAGCAGATCAAAGGTCATCTTCCAAGTTGAACAGTGATTCTGCTAAATTAAGGAACGATGGATTACTTCAGGCTTCAGGCTCTTCAAGTGATCTGGTTTCTGCAAATGCAAGTGGAATGAAGGGTGAGAAGGATGATGAAACCTCAGCTGATGTCAAACTTGAAAGACATCAAAGTGATTTGGATCCTATGCCTTCTGAGTCCCGAGGTTTAGGTGGCTTGTGTTCAGCTACCAACCACGAGGATGAGCATGTGGAGGAGAATTTGGAATCTAAAGAGAATACAGAGAGAAGTGGAGGACAAACACATCAAGGGCAATCTATTATTTCTACTGTCCAAGAAACTGAGCAGCCTAAGCCATCCAAGAGATCCAAATTAGCTGGTGTTGAAGCAGAAGAGGCAGAGGAGTCTACATCCACTGCTGCAGATGCTGGTTCCATGTCTGCTGTGGGGGTGTCAGATATGGATGCTAAGTTGGAATTTGATTTGAACGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGCAGCTTTACACCATCTGGTTGTTTGTCAACTGTTCAGTTAATTAGTCCGTTGCCCCTTCCTGTATCTAATGTGACAAACAACATTCCTGCTTCAATTACAGTTGCAGCTGCGGCAAAAGGAGGTTTTGTACCACCTGATGATCTATTGAGGAGTAAAGGGGAACTTGGTTGGAAAGGATCAGCAGCCACCAGTGCTTTTCGACCTGCTGAACCTAGAAAAGTTCTAGAAATGCCACTAGGTCTTGCAACCACTCCACTTGCTGATGTTGCAGTCAGTAAAATTTCTCGACCCCCACTGGATATTGACTTGAATGTTCCTGATGAAAGGATTCTTGAGGATATGAATGCTCAGATGTCTACTCAGGAGGTGGCTTCTAAGTCTGACCTGGCTAATAATCGTGATCTCGCACATGGACGTTGTTCTGGAGGACTAGATCTTGACTTGAACCGAGTTGATGATGCTCCTGATCCAAGCAACTTCTCCTTGAACAATTGTCGTAGAATAGATACTCCTCTTAGTGTTAAATCATCTACTGTTCCTCTCAATGACAAGGTGAATTTTCGTAGGGACTTTGATTTAAATGGACCTATTGTTGATGAGGCCACTACTGAACCATCAATATTTCCTCAGCATGCCAGAAGCAGTATGCCATCCCAGGCATCTGTTTCTGGCCTTTGGATGAACAATGCAGAAATGGGAAATTTTCCATCATGGTTTCCTCCAGGGAATGCCTATTCAGCTGTTGCAATTCCATCAATTTTGCCTGATAGAGCAGAACAGTCTTTTCCAGTTGTTGCAACAAATGGACCACCCAGGATTTTGGGACCCACAAGTGGTAGCAGTCCATATAGCCCTGATGTCTTTAGAGGGCCAGTATTATCATCGTCTCCGGCAGTGCCGTTTCCTTCTGCAACTTTTCAATATCCTGTCCTGTCTTTTGGAAACAGCTTCCCTCTACCTTCAGCCACGTTTTCAGGTAACACAACAGCATACGTTGATTCATCATCTGGTGGCAGGCTTTGCTTCCCAGCAGTCCCTTCACAGTTCTTAGGTCCTCCTGGTACAGTTTCAACCCCTTATCCAAGACCTTATGTTGTCAGTCACTCAGATGGCGGCAACAATACTAGTTCTGATAGTAGTCGAAAGTGGGGAAGACAAGGTTTAGATCTAAATGCTGGTCCTGTAGTTCCAGACATTGAAGGAAGAGAGGAATCATCATCCTTGGTACCAAGGCAACTATCTGTTGCCGGTTCGCAGGCCACTGCCGAAGAGCATATGAGGGTTTACCAGCCAGCAATTGGCATAATGAAGAGAAAGGAGCCAGAGGGAGGATGGGATGGGTACAAACAGTCATCATGGTAG 5391 44.74 MFLTRVFGRTFLAAARSETSSATGAAAAAAATARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKPELPDLPGTARTRLSTKAVFCIDLGFLSKPIALNWLSSVQLGLGLMVLVRREGGIEAGIGENARLCMGVEVRTGNGLGTCGQSPHVVCYLVPRCVCFTRAGCLRDLFQGGRRISVGDCALFKPPQDSPPFIGIIRWLTTGKENKLKLGVNWLYRSSELKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGISSFVCRRVYDITNKCLWWLTDQDYINERQEEVDQLLYKTRIEMHASVQPGGRSPKPTSGPTSTSQLKANSDSVQTTAFPSHTKGKKRERSDQGLESVKRERIIKADEGDSANCRLENILKSEIAKVAEKGGLVDSEAVEKLVQLMLTDRNDKKIDLAGRSALAGVIAATDKVECLSQFVHLKGLPVLDEWLQEVHKGKIGSGGSPKDSDKAVEEFLLVLLRALDKLPVNLPALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRPSEVSHGGRNQDASSEVAMKSSVSQLSTSKSASVKLAQDDSVTRSASASPGSMKPVLSPASASINSKDGSSRNPGVCGTTDLAQTIARDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPGPVLSGGQRDVGSGKSSLHRNTVLERSSQSGMTFEKASDGPIAEGNSPKLIVKITNRGRSPAQSASGGSFEDPSTINSRASSPPLSDKHDQLDHSKSDTCQPNITGDVNAESWQNSDVKDTVIGADDGDGSPAAVNGDECCRAAEDVTVSKATPSSLANDHKNGKLHEASFSSINALIESCIKCSEASMPTSLTDNVGMNLLASVAAVEMSKSDFVLPSDTQGNMTAVDRSSRSSDYKVKASCPEEDARDDVPTNDAMDVTEQGLITSSFGGKNVDGRSVLQSEEKPVGDLNGHSKSSGVNLQQTAVAMADGCMKMNEVGGPASPTRIPEKGFEIKGAKPVKDRKTADVVDGESSPESKPKPSSSFPDGGIVGDGISTREVEMDVLDEPLHRRQDVDGNTNNRLNGISTADQRSSSKLNSDSAKLRNDGLLQASGSSSDLVSANASGMKGEKDDETSADVKLERHQSDLDPMPSESRGLGGLCSATNHEDEHVEENLESKENTERSGGQTHQGQSIISTVQETEQPKPSKRSKLAGVEAEEAEESTSTAADAGSMSAVGVSDMDAKLEFDLNEGFNVDDGKCSEPSSFTPSGCLSTVQLISPLPLPVSNVTNNIPASITVAAAAKGGFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGLATTPLADVAVSKISRPPLDIDLNVPDERILEDMNAQMSTQEVASKSDLANNRDLAHGRCSGGLDLDLNRVDDAPDPSNFSLNNCRRIDTPLSVKSSTVPLNDKVNFRRDFDLNGPIVDEATTEPSIFPQHARSSMPSQASVSGLWMNNAEMGNFPSWFPPGNAYSAVAIPSILPDRAEQSFPVVATNGPPRILGPTSGSSPYSPDVFRGPVLSSSPAVPFPSATFQYPVLSFGNSFPLPSATFSGNTTAYVDSSSGGRLCFPAVPSQFLGPPGTVSTPYPRPYVVSHSDGGNNTSSDSSRKWGRQGLDLNAGPVVPDIEGREESSSLVPRQLSVAGSQATAEEHMRVYQPAIGIMKRKEPEGGWDGYKQSSW 1796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29969371 29980121 + ClCG06G016810.2 Cla06g01645 275837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01645 1796 SMART TFS2_5 508 587 IPR003617 GO:0005634
Cla06g01645 1796 Pfam Mitochondrial 39-S ribosomal protein L47 (MRP-L47) 40 111 IPR010729 GO:0003735|GO:0005761|GO:0006412
Cla06g01645 1796 MobiDBLite consensus disorder prediction 591 870 - -
Cla06g01645 1796 Pfam BAH domain 224 331 IPR001025 GO:0003682
Cla06g01645 1796 MobiDBLite consensus disorder prediction 1089 1112 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 1244 1262 - -
Cla06g01645 1796 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 217 1796 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 1711 1727 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 814 842 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 398 415 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 982 1012 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 363 415 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 368 397 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 731 750 - -
Cla06g01645 1796 ProSiteProfiles BAH domain profile. 222 337 IPR001025 GO:0003682
Cla06g01645 1796 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 490 599 IPR035441 -
Cla06g01645 1796 Gene3D - 36 113 IPR038340 -
Cla06g01645 1796 ProSiteProfiles TFIIS N-terminal domain profile. 502 588 IPR017923 -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 1263 1282 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 1205 1228 - -
Cla06g01645 1796 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 451 589 IPR035441 -
Cla06g01645 1796 SMART BAH_4 222 337 IPR001025 GO:0003682
Cla06g01645 1796 Pfam TFIIS helical bundle-like domain 536 585 IPR017923 -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 767 792 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 1146 1312 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 1156 1201 - -
Cla06g01645 1796 Gene3D - 213 434 IPR043151 -
Cla06g01645 1796 CDD Ribosomal_L29_HIP 65 111 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 592 719 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 1709 1764 - -
Cla06g01645 1796 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 217 1796 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 854 870 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 1075 1132 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 1283 1297 - -
Cla06g01645 1796 MobiDBLite consensus disorder prediction 990 1012 - -
Cla06g01645 1796 CDD TFIIS_I 510 586 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01645 - - - bhj:120071278 2930.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00539 Cla-Chr11:6131877 Cla06g01645 Cla-Chr6:29969371 2.37E-07 dispersed
Cla01g00265 Cla-Chr1:2713734 Cla06g01645 Cla-Chr6:29969371 4.23E-18 transposed
Cla05g01862 Cla-Chr5:30504288 Cla06g01645 Cla-Chr6:29969371 1.62E-10 transposed
Cla10g01381 Cla-Chr10:28881557 Cla06g01645 Cla-Chr6:29969371 1.76E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61339 PF01426 BAH 1.50E-08 No_clan Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01645 Cla_Chr06 FPKM 0.0 0.0 0.404947 0.193079 0.0 0.249728 0.566667 0.155801 0.13359 0.0