Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01650 ATGGCGTTTACTGATGTAGAAGAGTCTCCTCCTTGCGAAGCCGATAAGTCCAATTCTTTGTTGCCGACCGCCAGGTGCGGTTGTTTCCGGTTATCGTGTTTTGGATCTCGCCGTGTGGCCACCGTCGGACCGTCGTGGTGGGAGCGGATTAGGGCATCGCAGGTTCATAGCGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGCTCTTTTGAAGCTCCGAGAATGGTCGGAGATCGTCGCTGGACCGAGATGGAAGACTTTCATTCGCCGATTTAATCGGAATCGGAGTGGTGGTGGTGGTGGAGGTGGTGTTAGGGCTGGGAAATTTCAATACGATCCTTTGAGTTACGCTATGAATTTCGATGAAGGTTCGAGGCAGATTGGAGAATTGGAGGACGATATCGACGACTTCAATGGTTATCGGAACTTCTCTGCTCGTTACGCTTCAATTCCGGCGCCGTTGAAGACCGGAGGAACCAAGGATGTTTCTGCCGTCGCGTAA 501 53.49 MAFTDVEESPPCEADKSNSLLPTARCGCFRLSCFGSRRVATVGPSWWERIRASQVHSEGRWWARGVRALLKLREWSEIVAGPRWKTFIRRFNRNRSGGGGGGGVRAGKFQYDPLSYAMNFDEGSRQIGELEDDIDDFNGYRNFSARYASIPAPLKTGGTKDVSAVA 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30005829 30006329 - ClCG06G016870.1 Cla06g01650 275842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01650 166 PANTHER NHL DOMAIN PROTEIN 10 163 - -
Cla06g01650 166 PANTHER BNAA06G16930D PROTEIN 10 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01650 - - - csv:105435925 293.893
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g01284 Cla06g01650 CCT
Cla01g01284 Cla06g01650 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01650 Cla-Chr6:30005829 Cla08g01352 Cla-Chr8:26337256 1.48E-06 dispersed
Cla06g01197 Cla-Chr6:25180548 Cla06g01650 Cla-Chr6:30005829 1.06E-17 transposed
Cla11g01444 Cla-Chr11:28054911 Cla06g01650 Cla-Chr6:30005829 4.57E-06 transposed
Cla01g01284 Cla-Chr1:26119026 Cla06g01650 Cla-Chr6:30005829 5.76E-48 wgd
Cla06g01650 Cla-Chr6:30005829 Cla09g01841 Cla-Chr9:36072783 1.17E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g715 . Blo16g00216 . . . Bpe13g00255 Bma06g00207 . Cmo13g00927 . . . Car10g00128 Car11g00104 Sed08g0141 Cpe20g00228 Cpe04g01546 Bhi02g00422 Tan09g2227 Cmetu04g2397 . Hepe09g0189 . . Cla06g01650 . Cec06g1884 Cco06g1890 Clacu06g1794 Cmu06g1736 Cre06g2554 . . . . . Csa01g00834 Chy12g01284 Cme12g01709 Blo13g00050 . . . . . . Bma08g00173 Sed08g2493 Cmo10g00143 . Cma13g00900 Cma18g00157 Car13g00740 Car18g00150 Cpe09g01036 . Bhi08g01586 Tan05g2029 Cmetu12g1291 Lac10g0430 Hepe07g2242 . . Cla01g01284 Cam01g1444 Cec01g1482 Cco01g1445 Clacu01g1351 Cmu01g1255 Cre01g1281 . Csa01g00165 Chy02g02566 Cme02g01955
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002584 1 2 2 2 1 1 4 2 2 2 2 2 3 2 2 2 2 2 3 2 2 2 2 1 2 0 2 4 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01650 Cla_Chr06 FPKM 165.117889 180.638565 327.060303 309.388123 103.139816 129.53653 100.005569 730.775085 799.272278 721.479919