Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01655 ATGAAAGAGAACAATGATGGATTTGTGCGTGCGGATCAGATTGATCTCAAGAGCTTGGATGAACAGCTTGAGAGGCATCTTAGTAGAGCCTTGACCATGGAGAAGAACAAGAAGAAAGATGAAGATGGTGGTAATAGCTTTCTCACTTCTGCGCCTATCGCTCGCAGTAGGTCTACTAAAGTCGCCGCTAAGGACCGGCAGGAGTGGGAGATCGATCCGTCCAAATTGATTATCAAAAGCGTCATTGCTCGTGGTACTTTCGGCACCGTCCACCGCGGCGTTTACGACGGACTAGATGTCGCCGTCAAGTTGCTGGATTGGGGAGAAGAAGGTCACAGGACAGAAGCTGAAATTGCTTCACTAAGGGCCGCCTTTAAACAGGAAGTTGCTGTTTGGCATAAACTAGAGCATCCCAATGTTACAAAGTTTATAGGGGCAACGATGGGCTCGGCAGAGTTACAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGCAACATATGTTGTGTTGTGGTGGAATATCTTGCTGGAGGCGCCCTTAAATCTTATCTCATAAAAAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGCTGGCACTTGATCTTGCTAGAGGGTACCACCTGCTCACACAATTCCTTCTGTTCACTAGTCTCCTTTTGCTTGAGGCTAGTATGTTGAGTTACCTTCATTCACAGAAGATTGTTCACAGAGATGTAAAGACAGAAAACATGCTGTTGGACAAAACACGTACAGTCAAAATTGCTGATTTTGGCGTTGCTAGAGTTGAGGCCTCAAATCCCAATGACATGACTGGGGAGACCGGGACACTTGGTTACATGGCTCCTGAGCTAACTCATATGACATTAGAGAGCATTGTCCATAAAATGTTTCCCTTTGATTCCATAGTTGTGTTCCTCATTTATTACGTGGAAACTGGAAACGTTCAGTGCCAAAATGTAGCTATCGAAGATGATGCTTTTGCTAAATTTATAGTGGTCCATCTGGTTCTTAATGGTAACCCATATAACAGGAAGTGTGATGTGTATAGTTTCGGCATCTGCCTGTGGGAAATTTATTGCTGTGATATGCCATATCCTGACCTTAGTTTCTCCGAAGTGACTTCTGCTGTTGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGCCCGAGCTCTCTAGCAAATGTGATGAAGCGTTGCTGGGATGCGACCCCAGACAAGCGGCCTGAGATGGATGAAGTAGTTTCCATGTTGGAGGCCATTGACACTTCCAAGGGTGGAGGTATGATTCCTGTTGATCAAGCTCAGGGTTGTCTATGCTTTCGAAAATATAGAGGACCCTAA 1356 45.35 MKENNDGFVRADQIDLKSLDEQLERHLSRALTMEKNKKKDEDGGNSFLTSAPIARSRSTKVAAKDRQEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGYHLLTQFLLFTSLLLLEASMLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPELTHMTLESIVHKMFPFDSIVVFLIYYVETGNVQCQNVAIEDDAFAKFIVVHLVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30061814 30065630 - ClCG06G016920.1 Cla06g01655 275847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01655 451 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 338 445 - -
Cla06g01655 451 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 212 - -
Cla06g01655 451 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 221 288 - -
Cla06g01655 451 PIRSF ILK 40 324 - -
Cla06g01655 451 PIRSF ILK 314 431 - -
Cla06g01655 451 Gene3D Phosphorylase Kinase; domain 1 65 159 - -
Cla06g01655 451 CDD STKc_MAP3K-like 82 422 - -
Cla06g01655 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Cla06g01655 451 SMART serkin_6 76 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01655 451 SUPERFAMILY Protein kinase-like (PK-like) 57 422 IPR011009 -
Cla06g01655 451 MobiDBLite consensus disorder prediction 30 44 - -
Cla06g01655 451 Coils Coil 16 36 - -
Cla06g01655 451 Gene3D Transferase(Phosphotransferase) domain 1 177 438 - -
Cla06g01655 451 Pfam Protein tyrosine and serine/threonine kinase 340 422 IPR001245 GO:0004672|GO:0006468
Cla06g01655 451 PANTHER - 338 445 - -
Cla06g01655 451 PANTHER - 1 212 - -
Cla06g01655 451 PANTHER - 221 288 - -
Cla06g01655 451 MobiDBLite consensus disorder prediction 30 50 - -
Cla06g01655 451 ProSiteProfiles Protein kinase domain profile. 76 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01655 451 Pfam Protein kinase domain 79 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01655 Cla-Chr6:30061814 Cla09g00676 Cla-Chr9:6423803 2.33E-176 dispersed
Cla10g01357 Cla-Chr10:28613891 Cla06g01655 Cla-Chr6:30061814 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80661 PF00069 Pkinase 2.20E-27 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01655 - - csv:101209182 724.931