Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01657 ATGATCGTACGAGAACCAGCTCTTGTTCTTGTGATTGCTTCCGATTCATTGCCATCAAGGTCGATCAGGTTTCTGCACCGTCGTATGGCGGTTGATTATACTACTGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGTTGGCAGCAGAGGTACGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGGTTGGTTCTATTATGTTTACTATGCAGATTCCTATTCCTATTGGATGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCAGATTGGGCTTTTGAAGCCGCTGGACAAGAAACAAGGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGTTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCAAGATGTCGGTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCCGACACTGATAGGCCATCTGCAAGTGTTGTTACAGCCAACCGTTATATGAGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAATGCTGATGCGCATGGTGATTTAGAGTCTGGTAGTGGTTTGGAAGCTGCTGAGAATGGGTCTGCCCATGACACCACTGTTCTGGAGACGGAACGGTCTCCCCTGAACGATAAGTGTCCACATCTTGCCATTTGCAAATCCCGGCAACTGTGTTTTTACTATGGGGAACAAGACGTCAACTCAAGGTGGGGTCATAAATTATTGGAAAATGTCTCTGGTTCAATGCACACTTCATTCTCCACCAGGAATGTGGCGATGACCGAGTGGAGCAGCCTTTACGAACGAATGTGGTAA 1233 46.31 MIVREPALVLVIASDSLPSRSIRFLHRRMAVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKVGSIMFTMQIPIPIGWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDTDRPSASVVTANRYMRSQPSSQSYLVRLQGLLRPVRTENADAHGDLESGSGLEAAENGSAHDTTVLETERSPLNDKCPHLAICKSRQLCFYYGEQDVNSRWGHKLLENVSGSMHTSFSTRNVAMTEWSSLYERMW 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30084390 30090326 + ClCG06G016940.2 Cla06g01657 275849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01657 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 23 338 IPR044793 GO:0004842|GO:0010182
Cla06g01657 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 23 338 - -
Cla06g01657 410 CDD RING-H2_RNF111_like 215 259 - -
Cla06g01657 410 Pfam Ring finger domain 215 257 IPR001841 -
Cla06g01657 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 262 IPR013083 -
Cla06g01657 410 ProSiteProfiles Zinc finger RING-type profile. 216 257 IPR001841 -
Cla06g01657 410 MobiDBLite consensus disorder prediction 317 337 - -
Cla06g01657 410 SUPERFAMILY RING/U-box 198 265 - -
Cla06g01657 410 SMART ring_2 216 256 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01293 Cla06g01657 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01657 Cla-Chr6:30084390 Cla11g01841 Cla-Chr11:32014194 8.86E-12 dispersed
Cla05g00192 Cla-Chr5:1731311 Cla06g01657 Cla-Chr6:30084390 2.10E-12 transposed
Cla10g00333 Cla-Chr10:4344080 Cla06g01657 Cla-Chr6:30084390 1.09E-13 transposed
Cla01g01293 Cla-Chr1:26231130 Cla06g01657 Cla-Chr6:30084390 1.27E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01657 K16284 - csv:101208939 570.081