Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla06g01657 | ATGATCGTACGAGAACCAGCTCTTGTTCTTGTGATTGCTTCCGATTCATTGCCATCAAGGTCGATCAGGTTTCTGCACCGTCGTATGGCGGTTGATTATACTACTGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGTTGGCAGCAGAGGTACGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGGTTGGTTCTATTATGTTTACTATGCAGATTCCTATTCCTATTGGATGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCAGATTGGGCTTTTGAAGCCGCTGGACAAGAAACAAGGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGTTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCAAGATGTCGGTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCCGACACTGATAGGCCATCTGCAAGTGTTGTTACAGCCAACCGTTATATGAGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAATGCTGATGCGCATGGTGATTTAGAGTCTGGTAGTGGTTTGGAAGCTGCTGAGAATGGGTCTGCCCATGACACCACTGTTCTGGAGACGGAACGGTCTCCCCTGAACGATAAGTGTCCACATCTTGCCATTTGCAAATCCCGGCAACTGTGTTTTTACTATGGGGAACAAGACGTCAACTCAAGGTGGGGTCATAAATTATTGGAAAATGTCTCTGGTTCAATGCACACTTCATTCTCCACCAGGAATGTGGCGATGACCGAGTGGAGCAGCCTTTACGAACGAATGTGGTAA | 1233 | 46.31 | MIVREPALVLVIASDSLPSRSIRFLHRRMAVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKVGSIMFTMQIPIPIGWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDTDRPSASVVTANRYMRSQPSSQSYLVRLQGLLRPVRTENADAHGDLESGSGLEAAENGSAHDTTVLETERSPLNDKCPHLAICKSRQLCFYYGEQDVNSRWGHKLLENVSGSMHTSFSTRNVAMTEWSSLYERMW | 410 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 30084390 | 30090326 | + | ClCG06G016940.2 | Cla06g01657 | 275849 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla06g01657 | 410 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 23 | 338 | IPR044793 | GO:0004842|GO:0010182 | |
Cla06g01657 | 410 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 23 | 338 | - | - | |
Cla06g01657 | 410 | CDD | RING-H2_RNF111_like | 215 | 259 | - | - | |
Cla06g01657 | 410 | Pfam | Ring finger domain | 215 | 257 | IPR001841 | - | |
Cla06g01657 | 410 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 180 | 262 | IPR013083 | - | |
Cla06g01657 | 410 | ProSiteProfiles | Zinc finger RING-type profile. | 216 | 257 | IPR001841 | - | |
Cla06g01657 | 410 | MobiDBLite | consensus disorder prediction | 317 | 337 | - | - | |
Cla06g01657 | 410 | SUPERFAMILY | RING/U-box | 198 | 265 | - | - | |
Cla06g01657 | 410 | SMART | ring_2 | 216 | 256 | IPR001841 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla01g01293 | Cla06g01657 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g01657 | Cla-Chr6:30084390 | Cla11g01841 | Cla-Chr11:32014194 | 8.86E-12 | dispersed | |
Cla05g00192 | Cla-Chr5:1731311 | Cla06g01657 | Cla-Chr6:30084390 | 2.10E-12 | transposed | |
Cla10g00333 | Cla-Chr10:4344080 | Cla06g01657 | Cla-Chr6:30084390 | 1.09E-13 | transposed | |
Cla01g01293 | Cla-Chr1:26231130 | Cla06g01657 | Cla-Chr6:30084390 | 1.27E-104 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla06g01657 | K16284 | - | csv:101208939 | 570.081 |