Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01660 ATGCCGGGAATTGTCATGGATGAAATCAATGAAGAAAGGGCTGTGAATAAACACAACGGTTCTTCGATTCATATGGAAGAGTCGTATGGAAACAAGTCGCCGAGGAGCGGGTTGAGTGTTCAGAGCCATGGAAGTGTTCATGTTGATTTCCCTGTTGATGGCTTGGTCGATACCTCTATTGAGAAGCTTTATGAGAATGTTTGTGATATGCAAAGTTCGGATCAGTCACCTTCAAGGCGTAGCTTTGGCTCTGATGGTGAGGAATCCAGGATTGATTCTGAACTGAATCATCTTGTTGGAGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAAGATATTGTTGAGAAGCCTGAACATGATTTTCCTAGTGATTCTATGAATCAATCACCATCTGAAGATAAGAAGGAGAAGGCTGAAAATACCCAACCTGGAAGCTCAAAACGTCTTTCTTCTGGAAAAAAAGCTCCTCACCTGCAATTGGACGAGACATCTCCAAAATCAAGTCCCAGGGGCAAGGGTTTGTTGGATAAACCCCCTATTAGCAGAAAGAATGAAAAGAATTTGAAAAAAAATAGTCCAGTTGCTGCTCAATTAAAGAAGCAGAAAGATTCACCTTTGAGGGGCTCAAAAATGCAGAATGGAATTGAGGATTTTGATGAATCAATGATGGATAATCCTGATCTAGGACCCTATCTACTTAAGCAAGCAAGGAATTTAGTTTCCTCAGGGGAGAATCTGCAGAAAGCTCTTTTAATAGCACTTCGTGCTGCAAAATCTTTTGAACTATCTGCAAATGGGAAACCCAACTTAGAACTTGTTATGTGTTTGCATGTCACAGCAGCAATATACTGCAGCTTAGGCCAGTACAGTGAGGCAATACCTCTATTGGAGCATTCCATCGAGATTCCTGCCATCAAGGAAGGGCATGAGCATGCACTGGCCAAATTTGCAGGGCACATGCAATTGGGTGATACCTATGCAATGCTGGGCCAGCTGGAAAATTCTCTAGTCTGTTATACAACTGGGTTAGAGGTGCAGAAACAAGTCCTAGGAGAAGCAGACCCCAGAGTTGGTGAGACCTATAGGTATTTAGCTGAAGCTCATGTTCAAGCTTTGCGATTTGATGAGGCTGAGAAATTTTGTCAAATGGCACTCGATATTCACAAAAAGAATGTTGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGGAGGCTTATGGGCCTCATATGTGAAACAAAAGGAGATCATGAAGCTGCGCTCGAGCATCTAGTTTTAGCCAGCATGGCCATGGTGGCAAATGGCCAAGAGACTGATGTGGCTGCAGTTGATTGCAGCATTGGAGATTCATACTTATCCTTGTCCCGCTATGACGAGGCTGTTTTTGCTTATCAGAAAGCCCTCACTGTTTTCAAAACCACTAAGGGAGAAAACCATCCAGCAGTTGGTTCAGTATATGTTCGTCTTGCTGATTTATACAACAAGACTGGAAAAATGAGGGAGTCAGTATCGTACTGTGAAAATGCCCTTCGAATTTATGAAAAGCCTGTCCCAGGGATTCCTCCAGAGGAGATTGCTAGTGGTCTTACTGATATTGCAGCTATTTATGAATCAATGAATGATGTTGAGCAAGCAGTCAAATTATTACACAGGGCATTGAAGATATATAATGATGCCCCGGGACAGCAAAACACCATTGCTGGAATAGAAGCCCAGATGGGTGTCTTGTATTATATGTTGGGGAACTATTCTGAATCTTACGACTCCTTCAACAATGCGATTCCAAAGCTTCGCAACAGTGGAGAGAAAAAATCTGCTTTCTTTGGTATAGCCCTTAATCAAATGGGTCTCGTGTGTGTTCAGAAATACGCTATAAATGAAGCTGTGGAGTTATTTGAAGAAGCCAAGAGCATATTAGAGCAAGAATATGGACCTTATCATCCTGATACTCTCGGGGTATACAGCAACCTTGCTGGAACATACGATGCAATTGGCAGGTTAGATGATGCAATTGAAATTTTGGAGTATGTTGTTGGCATGCGGGAGGAAAAACTTGGGACAGCCAATCCCGATGTCGATGATGAGAAGAGGAGGTTGTCTGAGTTGTTGAAAGAAGCAGGTAGAGTTCGGAGCCGAAAGGCGAGATCACTCGAGACTCTTCTCGATGCCAATGCTCATCCTGTAAACAGTAAAGGTTTCTTCCACTCACCATTCTTCCGATCGCCGACTGCAAGTACAAGATATCGTGTATTTGTATCTGCAACTATGGTTGAAAAACCTTCTAGTTTGTCATCTACTCTTGTTGATCAGCCAGTTGTTCCAGGAGACGTGGTTCTCGACCTCTCGAACATGGCCAACGAGACAATCAAGCTTGGAGGCGGTCTTCGACAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAACTGAGGTTCTCTAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTTCTTGGAATCGTGCTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCATTGGCCGTTCTTCCTGTTCTTGCATTTGAAGGAGGAACTAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTGAACCCTGGTATGAATCCTGAGTTGGCATGTACAGATGCGAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCCGCATGTCCAGTTCTTGAATCTCTTGGAAAGAAGCTTTCATTCGAGATAGCAGTTGGTTTAAATGGCCGAGTTTGGGTCAATTCCGATTCTCCGTCCACAACCATTGTTGTTTCAAATGCAATATTGAACTCCGAGACTCTGTCTGGGGTTCAACAGAGAATCATGGTGGACAAACTCCTTAACAATTTAAAGCTGTCAAAAGGGGCTCCCATGGCGGCAACCCAATCTGCTCCTCCTTCTTCGAATGACGATAACTCCCAGAATTCAGCTCCAGCTCCAGCTCCTGCACGAGCTACGATCGAGGATCATGGAGATGCGAAGGCGGAGGTTGAGAAGCAAACCTCTCCACCATCGGTGTTTGTGAACTCTGAACCAATGAGAGAGGATCAAGTGCAAAATGCTGTGAAATTTCTTCAACACCCTAGAGTAAGAGGCTCTCCTGTTGTCTATAGACGATCGTTTTTAGAAAGAAAGGGTCTTACAAAGGAAGAGATTGATGAAGCATTCAGGCGTGTGCCCGACCCGCCTTCTAATGCTCAGACTGCTACTGTGAGTCAAGATGGACAGGTGAACACAGTTCAACCACAACCCTCGACACAATCTCTTCAACCAGTTGCTGCTGCCACTCCTCTTGCAGGTGGTGAATCTCGTGTGGGTACTGTTGCACGGTCTAGATTCCATTGGTCACATGCCATTCTCGCAATAGGTGTACTGGCCGTTTCAGGTGCTGGAACAGTTGTAGTATTCAAGAATTCTATTATTCCTAGGTTAAAATCTTGGGTGCGTAAAGTTGTATTAGAAGATGATGACGTTGAGAAGAAAATAAATTTAAAACCAAGTGCAGCAGAGGAAGCAGCTGCTGCTGCCAAAGCAGCAGCAGCAGCAGCATCTGATGTGGCAAAGGCGAGCCAAGAGATGCTGTTTTCTAAAAATGAAGAGAAAAAGAAGTTTGAGGACTGTGTCGACTTGTTGAATGCTCAGCTTGGGCAGATGAAGTTGATGCTGAAGGCCATTCAGAATTTGGAAGCAACCACGTATGGAAGAACTACTACCGTTGATCAAGAAGATTATCGAATTACTCCCATGAGTTCAAAGCAGCCATATTCCAATGGCAAGTTGGACCTTAGCTTCCAGTCAGCTACACCTGCCACACCTATTGAACCCTCCGTTGCACCGCATCCCAAGTCTTACATGGAGATCATGGCCATGGTCCAGAGAGGAGAAAAGCCATCTAATATTAGAGACATAGACGATTTACCTCCCAACCCAAATCAACAGCCATCAAATCCTCGCCTAGCTCCTAGAGCCAAGCCTTGGGAGGTTGGTACGCAAAACAATCCTGCCTTTTTCCCTCAGTCTCAAGATGATGCTGGTTTGAATTCCTTGGTACAAAACAATGGTTTGACTTACGAGAATGATAACCCTTCAGTGCCTTGGTGGCAGAAGAGAAATGTTAATATTACTGAGATCGACAATAATGAGTTGAAAGTAGGCTCTTCCAATGGTCTCTCTGCTGAGAAACCAGTTCAACGTGCATGGGTTCCTCCTCAGCCACCACCTGTCGCATTGCCAGAAGCTGCCGAAGCCATCCGAAGGCCAAAACCAACTATCCAGAAAGAGCAGTTTACTGACGAACAGTTAGCAACACAACCAAATGTAACTGATGAGTTGCAGAAAGCCACAAAAATTTCTGAATCTGGGGGAGCAATCGATTATGAGAACTTGGGAGTGAGCTCAAGTGAGATACAAGTGGAAGATAGCAGCTCTGGAGGACAATGA 4575 44.5 MPGIVMDEINEERAVNKHNGSSIHMEESYGNKSPRSGLSVQSHGSVHVDFPVDGLVDTSIEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEEDIVEKPEHDFPSDSMNQSPSEDKKEKAENTQPGSSKRLSSGKKAPHLQLDETSPKSSPRGKGLLDKPPISRKNEKNLKKNSPVAAQLKKQKDSPLRGSKMQNGIEDFDESMMDNPDLGPYLLKQARNLVSSGENLQKALLIALRAAKSFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAIPLLEHSIEIPAIKEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGEADPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVYVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAAIYESMNDVEQAVKLLHRALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYDSFNNAIPKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDANAHPVNSKGFFHSPFFRSPTASTRYRVFVSATMVEKPSSLSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAVLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPACPVLESLGKKLSFEIAVGLNGRVWVNSDSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSKGAPMAATQSAPPSSNDDNSQNSAPAPAPARATIEDHGDAKAEVEKQTSPPSVFVNSEPMREDQVQNAVKFLQHPRVRGSPVVYRRSFLERKGLTKEEIDEAFRRVPDPPSNAQTATVSQDGQVNTVQPQPSTQSLQPVAAATPLAGGESRVGTVARSRFHWSHAILAIGVLAVSGAGTVVVFKNSIIPRLKSWVRKVVLEDDDVEKKINLKPSAAEEAAAAAKAAAAAASDVAKASQEMLFSKNEEKKKFEDCVDLLNAQLGQMKLMLKAIQNLEATTYGRTTTVDQEDYRITPMSSKQPYSNGKLDLSFQSATPATPIEPSVAPHPKSYMEIMAMVQRGEKPSNIRDIDDLPPNPNQQPSNPRLAPRAKPWEVGTQNNPAFFPQSQDDAGLNSLVQNNGLTYENDNPSVPWWQKRNVNITEIDNNELKVGSSNGLSAEKPVQRAWVPPQPPPVALPEAAEAIRRPKPTIQKEQFTDEQLATQPNVTDELQKATKISESGGAIDYENLGVSSSEIQVEDSSSGGQ 1524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30114025 30128836 + ClCG06G016980.2 Cla06g01660 275852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01660 1524 Pfam KH domain 915 963 IPR004088 GO:0003723
Cla06g01660 1524 SUPERFAMILY TPR-like 228 687 IPR011990 GO:0005515
Cla06g01660 1524 Gene3D - 762 829 - -
Cla06g01660 1524 Gene3D K Homology domain, type 1 911 994 IPR036612 GO:0003723
Cla06g01660 1524 MobiDBLite consensus disorder prediction 1 42 - -
Cla06g01660 1524 CDD S1_Rrp40 827 912 IPR037319 GO:0003723
Cla06g01660 1524 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 914 996 IPR036612 GO:0003723
Cla06g01660 1524 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 725 - -
Cla06g01660 1524 MobiDBLite consensus disorder prediction 1005 1025 - -
Cla06g01660 1524 Gene3D Tetratricopeptide repeat domain 233 429 IPR011990 GO:0005515
Cla06g01660 1524 MobiDBLite consensus disorder prediction 1108 1136 - -
Cla06g01660 1524 Pfam Pex14 N-terminal domain 1059 1103 IPR006785 -
Cla06g01660 1524 MobiDBLite consensus disorder prediction 1343 1367 - -
Cla06g01660 1524 SUPERFAMILY Ribosomal L27 protein-like 766 826 - -
Cla06g01660 1524 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 725 - -
Cla06g01660 1524 MobiDBLite consensus disorder prediction 1103 1136 - -
Cla06g01660 1524 Coils Coil 693 713 - -
Cla06g01660 1524 SUPERFAMILY Nucleic acid-binding proteins 826 918 IPR012340 -
Cla06g01660 1524 Gene3D - 834 910 IPR012340 -
Cla06g01660 1524 Gene3D - 1051 1117 IPR036388 -
Cla06g01660 1524 Pfam Tetratricopeptide repeat 441 516 - -
Cla06g01660 1524 Pfam Tetratricopeptide repeat 611 678 - -
Cla06g01660 1524 Pfam Tetratricopeptide repeat 323 392 - -
Cla06g01660 1524 ProSiteProfiles TPR repeat profile. 527 560 IPR019734 GO:0005515
Cla06g01660 1524 MobiDBLite consensus disorder prediction 1002 1057 - -
Cla06g01660 1524 Pfam Family of unknown function (DUF5572) 1324 1373 - -
Cla06g01660 1524 Gene3D Tetratricopeptide repeat domain 625 724 IPR011990 GO:0005515
Cla06g01660 1524 ProSiteProfiles TPR repeat profile. 442 475 IPR019734 GO:0005515
Cla06g01660 1524 Gene3D Tetratricopeptide repeat domain 430 608 IPR011990 GO:0005515
Cla06g01660 1524 SMART tpr_5 360 393 IPR019734 GO:0005515
Cla06g01660 1524 SMART tpr_5 568 601 IPR019734 GO:0005515
Cla06g01660 1524 SMART tpr_5 527 560 IPR019734 GO:0005515
Cla06g01660 1524 SMART tpr_5 442 475 IPR019734 GO:0005515
Cla06g01660 1524 SMART tpr_5 484 517 IPR019734 GO:0005515
Cla06g01660 1524 SMART tpr_5 652 685 IPR019734 GO:0005515
Cla06g01660 1524 SMART tpr_5 275 308 IPR019734 GO:0005515
Cla06g01660 1524 SMART tpr_5 318 351 IPR019734 GO:0005515
Cla06g01660 1524 SMART tpr_5 610 643 IPR019734 GO:0005515
Cla06g01660 1524 MobiDBLite consensus disorder prediction 68 214 - -
Cla06g01660 1524 MobiDBLite consensus disorder prediction 21 42 - -
Cla06g01660 1524 MobiDBLite consensus disorder prediction 81 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01660 - - - bhj:120070989 1377.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01003 Cla-Chr4:25128908 Cla06g01660 Cla-Chr6:30114025 1.39E-06 transposed
Cla05g01136 Cla-Chr5:12033212 Cla06g01660 Cla-Chr6:30114025 1.47E-06 transposed
Cla06g00246 Cla-Chr6:3041111 Cla06g01660 Cla-Chr6:30114025 0 transposed
Cla07g01078 Cla-Chr7:27382234 Cla06g01660 Cla-Chr6:30114025 0 transposed
Cla09g00717 Cla-Chr9:7044595 Cla06g01660 Cla-Chr6:30114025 6.91E-50 transposed
Cla01g01295 Cla-Chr1:26256763 Cla06g01660 Cla-Chr6:30114025 1.12E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01660 Cla_Chr06 FPKM 0.806294 0.747184 1.638209 1.724797 2.448882 2.514952 1.888764 1.364972 2.151883 1.697404