Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01668 ATGGTTCACAGTCACAGTACCAGTACCACGGCCTACGCCCTACCCCTCTCTCTCTCTACGCCTCTAAATAATTCTTCCATTTTTCTCTCTCCGCTGTCGACCATGGCGGATCTTTACGGACTCCATCCCCTCGCTGATAACTCTTACCAGTCATCTTCAGCGACGACGTTGGGTAGCTTTCCTCTTCTTGCTAATTCTCCAATGGCTTCTGCAGATTATTCTCATCTACTTCCTGCTTTTGAATCGGAATATTTGCGGACGGTTTCGTCGGCCGCCTGCGACACCGTTGCGGCGGCGGCTGAGATTGAAACAGCGCGAGCTAATTCCGAGTACTCCGCCGGTGTAATTCGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAACTCGTCGATGCGTTCGTGAACTGCCAAAAGGTCGGTGTACCGCCGGAGTTCGCTGATATTCTAGACCAAAACAACCGTGGAAGTGATATCGGCGAAGAAATTTCCGGCGTTTCAAATTGCTTGGGTGTCGATCCCGAACTCGATGAGTTCATGGAAACATACTACAGGATACTAGCCAAATACGAGTTAGATCTCTCCCAGTCCTTCATGGAAGCATCTTCCTTTCTCAACAACATGGGAATGCAGTTAAACGTGCTTTGCAATAACGATGAAACTGCTCCGAAAGAGAATATAAGCGCCGGAGAAGTAGAATTACAAGACTCTCTTGTGGTTCCGGGAAATGAAGATCGCGAGCTGAAGGATCGACTTTTGCGGGAGTACGGTGGTCATATTAGTAGCTTAAAGCAGGAATTCTCAAAAACCAAAAAGAAGGCAAATCTGCCGAGAGAAGCCAAATAG 843 47.81 MVHSHSTSTTAYALPLSLSTPLNNSSIFLSPLSTMADLYGLHPLADNSYQSSSATTLGSFPLLANSPMASADYSHLLPAFESEYLRTVSSAACDTVAAAAEIETARANSEYSAGVIRAKIASHPLYPKLVDAFVNCQKVGVPPEFADILDQNNRGSDIGEEISGVSNCLGVDPELDEFMETYYRILAKYELDLSQSFMEASSFLNNMGMQLNVLCNNDETAPKENISAGEVELQDSLVVPGNEDRELKDRLLREYGGHISSLKQEFSKTKKKANLPREAK 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30261499 30270102 + ClCG06G017080.2 Cla06g01668 275860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01668 280 Pfam KNOX1 domain 116 152 IPR005540 GO:0003677|GO:0005634
Cla06g01668 280 SMART ELK_2 246 267 IPR005539 GO:0003677
Cla06g01668 280 Pfam ELK domain 246 267 IPR005539 GO:0003677
Cla06g01668 280 SMART KNOX2_2 165 216 IPR005541 GO:0003677|GO:0005634
Cla06g01668 280 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 35 280 - -
Cla06g01668 280 ProSiteProfiles ELK domain profile. 246 266 IPR005539 GO:0003677
Cla06g01668 280 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 280 - -
Cla06g01668 280 Pfam KNOX2 domain 169 215 IPR005541 GO:0003677|GO:0005634
Cla06g01668 280 SMART KNOX1_2 114 158 IPR005540 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01668 - - - bhj:120070843 379.407
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01668 Cla-Chr6:30261499 Cla08g01650 Cla-Chr8:29144261 4.78E-26 dispersed
Cla05g02558 Cla-Chr5:36873530 Cla06g01668 Cla-Chr6:30261499 1.67E-12 wgd
Cla06g01668 Cla-Chr6:30261499 Cla08g01740 Cla-Chr8:29881590 3.77E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g773 . . . Bda15g00550 . . . . . . . . . Car11g00082 . . Cpe04g01564 . . . . . . . Cla06g01668 Cam06g1854 . . . Cmu06g1753 . . . . . . . . . . . . . . . . Bma08g00095 . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01561 Csa01g00143 . Cme02g01983
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000818 2 3 3 3 3 3 4 2 2 3 3 2 3 2 3 3 4 4 4 3 3 3 2 4 4 3 3 3 3 3 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01668 Cla_Chr06 FPKM 0.0 0.0 0.051678 0.0 0.0 0.0 0.0 0.0 0.037267 0.0