Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01669 ATGGCGACTCAACGTCTGAGTGTGACACCGCCACTTGCTTGGCGTTCGCATTTCATCTTTTACTTATCCGTAATGTCAGGCATCGACGTTGATATGACTGTAGGAAACGATTCATTATGCGCTCCTCTTGAATGGAAGTTCTCTCAGGTCTTCGGTGAACGAGTTGCCGGAGAGGATATTCAGGATGTTGATATCATATCAGCGATTGGATTCGATAAGACTGGTGACAACCTTGCCATTGGGGACCGAGGTGGTCGTGTTATTATATTTGAGAGAAGGGACGGGAAGGATACTTCAAAAGACTACCCTACACGGAATAAGTTGGAGCAGTTGAATCTTACTCCCGCATGTCATCCTGAATACCAATACAAGACTGAATTTCAGAGTCATGAGCCTGAGTTTGATTACTTGAAGAGTTTGGAAATCGAAGAGAAGATTAATAAAATAAAGTGGTGTGTGTCACCCAATGGATCTCGCTTCATCCTTTCAACAAATGAAAAGACTATTAAATTATGGAAGGTTAAGGAGCATAAGGTGAAAACTGTTAAAGAGATGAACCCCAATCGATTTGTGAGTTCAGAGAATGCACTTTTGGCGGGAATCAGTTTCACTAGTGAACAAGACAAAGTATCTCTTTCCAATGGTTGCCATTGGAATTTGTCAGAGAATATGGCAACGAACAAGATTGCTGATCAAGACAACACTTCCCAGAGAAGATGCCGAAAGGTGTATGCTCATGCTCACGATTATAATATTAACTCCATTTCTAACAATAGTGATGGTGAGACATTTATTTCTGCAGACGACTTGCGAATAAACTTATGGAACCTTGAGATTAGTAATCAGTGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACAGAGATCATAACGTCGGCTGAATTCCATCCTCTGCATTGTAATCTTCTTGCGTACAGCAGCTCAAGGGGTTTTATTCGTCTAGTGGACATGCGCCAGTCTGCATTATGTGATGATAGTGCAATTCTGTTACGAACTGAAGAACTGAATCAACCAAAATCATTTTTTGCGGAGTTAATTTCATCCATTTCGGATATAAAATTTTCAAGTGATGGACGGTTTATCATTAGCCGGGATTACATGAATTTAAAGCTTTGGGATATCCACAAGTGCTCTTCCCCGGTTGCAGTTTTCAAGATCCATGAGCACCTGCGACCTAGGTTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGCCTCAGTGCAGACGGGCTTCACTTTGCAACTGGAACTTATAGCAACCAATTACGGATGTTCTCTTATGGCTCTGGAAGTTCAGAAGGGATCACTACAGAAGTGGGAAAGATTCCTGATAGGAAGCCACATCTCCAAACCACTCGGCGGGCGAGAAGATCGTCCTTAAGCAATTTGACACGTGATTTTTTTCGGCATGGCAATGAACATTCAAACTCGGACAATAACGAAACTTCCGTTGACCTGAACTCCAAGTTACTACATTCAGCGTGGCACCCATCCGAAAATTTAATCGCATGTGCTGCTGGAAGTGGTTTGTTCATCCATTATGCATAA 1596 41.6 MATQRLSVTPPLAWRSHFIFYLSVMSGIDVDMTVGNDSLCAPLEWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFERRDGKDTSKDYPTRNKLEQLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIKWCVSPNGSRFILSTNEKTIKLWKVKEHKVKTVKEMNPNRFVSSENALLAGISFTSEQDKVSLSNGCHWNLSENMATNKIADQDNTSQRRCRKVYAHAHDYNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDDSAILLRTEELNQPKSFFAELISSISDIKFSSDGRFIISRDYMNLKLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGTYSNQLRMFSYGSGSSEGITTEVGKIPDRKPHLQTTRRARRSSLSNLTRDFFRHGNEHSNSDNNETSVDLNSKLLHSAWHPSENLIACAAGSGLFIHYA 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30277487 30283372 + ClCG06G017090.2 Cla06g01669 275861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01669 531 SUPERFAMILY WD40 repeat-like 64 528 IPR036322 GO:0005515
Cla06g01669 531 PIRSF PPA2_B55 34 531 IPR000009 GO:0000159|GO:0019888
Cla06g01669 531 Gene3D - 104 332 IPR015943 GO:0005515
Cla06g01669 531 PANTHER OS02G0617600 PROTEIN 40 531 - -
Cla06g01669 531 Pfam WD domain, G-beta repeat 240 276 IPR001680 GO:0005515
Cla06g01669 531 Gene3D - 333 528 IPR015943 GO:0005515
Cla06g01669 531 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 40 531 IPR000009 GO:0000159|GO:0019888
Cla06g01669 531 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 133 147 IPR018067 -
Cla06g01669 531 SMART WD40_4 56 91 IPR001680 GO:0005515
Cla06g01669 531 SMART WD40_4 411 442 IPR001680 GO:0005515
Cla06g01669 531 SMART WD40_4 237 276 IPR001680 GO:0005515
Cla06g01669 531 SMART WD40_4 346 384 IPR001680 GO:0005515
Cla06g01669 531 SMART WD40_4 133 173 IPR001680 GO:0005515
Cla06g01669 531 SMART WD40_4 280 327 IPR001680 GO:0005515
Cla06g01669 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 70 90 IPR000009 GO:0000159|GO:0019888
Cla06g01669 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 415 441 IPR000009 GO:0000159|GO:0019888
Cla06g01669 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 248 275 IPR000009 GO:0000159|GO:0019888
Cla06g01669 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 361 388 IPR000009 GO:0000159|GO:0019888
Cla06g01669 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 333 360 IPR000009 GO:0000159|GO:0019888
Cla06g01669 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 149 177 IPR000009 GO:0000159|GO:0019888
Cla06g01669 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 304 332 IPR000009 GO:0000159|GO:0019888
Cla06g01669 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 276 303 IPR000009 GO:0000159|GO:0019888
Cla06g01669 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 389 414 IPR000009 GO:0000159|GO:0019888
Cla06g01669 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 500 529 IPR000009 GO:0000159|GO:0019888
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01669 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B - csv:101206601 924.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01669 Cla-Chr6:30277487 Cla09g00050 Cla-Chr9:482134 2.13E-172 dispersed
Cla06g01669 Cla-Chr6:30277487 Cla07g01295 Cla-Chr7:30069697 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01669 Cla_Chr06 FPKM 19.26684 18.868916 15.001063 11.653695 21.85931 11.239076 17.745436 5.659568 5.69689 7.625107