Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01670 ATGATATCCACCGAAATCGTGGACTTGTCAAGTGATGATGAGGAAGGATCAAACTTGAAAGCCGTGAAGTTGGAGCCAGGAGTTGGTGGGGCTGTGGTTCTACCAAAAGAGCACGCAAAGAAGAATATCATCAAACTTGAAAAACCAAATACTGAATTTGTTAGTCAAGGATTTGATGAAAATAGGAGCCCGAATGTTTGGAGTGCTGGGCAGAGTAGCTCTAGTATATTGGATCAGGTGCCATCTCCAGCTGATGATTCTGGCCTTACATCCCCATCTCCCTTGTGTCCTGCACCAGTTTGTCGACAATTCTGGAAAGCTGGCAACTATAATGATGGAGTTCCTTCTAATGTCACCGTTCAAAGTTCCAAAGGCCATCTGCATGTCCACCCTATGTTCCTTCATTCAAATGCTACTTCACACAAATGGGCCTTTGGAGCTGTTGCAGAGCTGCTTGATAACGCTGTTGATGAGATCCCCAACGGAGCTACCTTTGTCAATGTGGATAAAATCTTGAATGCAAGAGATGGAAGTTCTGCTTTGTTAATTCAAGACGATGGAGGTGGAATGGATCCTGAAGCGATGAGGAGGTGTATGAGCTTTGGATTTTCAGATAAATCATCAAAATCAGCCATCGGACAATATGGAAATGGTTTCAAAACCAGCACTATGAGACTTGGTGCAGATGTTATTGTCTTCAGTCGGCATGTGAATAATAGGTTTGGCTCTAGATTTGACATAGTTTACGACTTGTCCAGGGTATCAACGCAGAGTATTGGTCTTCTATCCTATACATTTTTGACCCGTTCAGGCTACAACAGAATTGTAGTGCCTATGGTAGATTATGAATATAACACATCAAGTGGCAAAATGGAAATATTGCACGGGAGAGAACGTTGTATGTCTAACCTTTCCATACTTCTTCAGTGGTCTCCGTACTCGTCGGAGTCTGAACTTCTTAAGCAATTTGATGATATTGGATATCATGGAACAAAAGTAATCATCTTTAATTTGTGGTATAATGGAGACGGTAGAATGGAGCTTGACTTCGATACAGATCCGGAGGACATTTGCATTGACAGAGATATAAAAAAAATTGACGCTCTCCCTGCATCAAAGGCAATCAACGAGCAGCACATTGCTAATCGATTGCAATATTCTCTCCGCGTAAGCTTGAGTTGCAAAAAGAATGCTACAACTTCATTTTGTATAGGACTAAGTTTTGAACTTACACTTCATGCTTCTCAGGAATATTTATCAATCTTGTATTTGCGGATGTCTGAAAATTTCAAAATAGTATTGCGTGGGAGGGTTGTTTTGCATCGTAATCTTGCCGATGATCTCAAGTATCTTGAATACATTATGTATAAGCCTCAAAGTGGTGGACATGTGGAGGGTGTGGTTGTTACTACAATTGGGTTCCTGAAGGAGGCCCCGGATGTCAATATACACGGTTTTAATGTTTACCACAAAAATCGTTTGATTCTGCCATTTTGGAGGGTTGTGAGCTATTCAGACAGTAGAGGAAGAGGCGTTGTTGGCATTCTCGAAGCAAGTTTTATTGAGCCTACACATAATAAACAAGACTTTGAGAGAACTTCTCTTTTCCAGAAGCTTGAAGCTCGTTTGAAAGATATGACTTGGGAATACTGGGATTATCATTGTGGACTCGTCGGGTATCAAGTTAAGAAACAACTCCGTGTGTCAGCAGCCTATCAAACACCATCCAACATCACAGTACCTGCTGGTACGGAACATACTCACATGTTGAAACAATGCTTTCCATCTGTCCGTGCTTATCAACAGAGCAATCAACAGAACAATCAACAGGCTATTGTTTTGTTGGAAGAAAATACGAAGCTTCGTGCAAAATGTTCAGAGTATGAAAAGCGGGAGGAGGAACTAAATCTCAAGGCAACAGGGCTTAGGATGGACATTCAGGAAGTTGAACACGAGATCCTGCGGTTGTTGGATGAGTTAAAATATTTAGAAGCAGTTAAGCAATTGGCTGAAGCAATGGAGCACTTGATGGGATCGAAGCAGGTGGACTGTATTTTCACCATGAAAAATCTTTGA 2076 41.43 MISTEIVDLSSDDEEGSNLKAVKLEPGVGGAVVLPKEHAKKNIIKLEKPNTEFVSQGFDENRSPNVWSAGQSSSSILDQVPSPADDSGLTSPSPLCPAPVCRQFWKAGNYNDGVPSNVTVQSSKGHLHVHPMFLHSNATSHKWAFGAVAELLDNAVDEIPNGATFVNVDKILNARDGSSALLIQDDGGGMDPEAMRRCMSFGFSDKSSKSAIGQYGNGFKTSTMRLGADVIVFSRHVNNRFGSRFDIVYDLSRVSTQSIGLLSYTFLTRSGYNRIVVPMVDYEYNTSSGKMEILHGRERCMSNLSILLQWSPYSSESELLKQFDDIGYHGTKVIIFNLWYNGDGRMELDFDTDPEDICIDRDIKKIDALPASKAINEQHIANRLQYSLRVSLSCKKNATTSFCIGLSFELTLHASQEYLSILYLRMSENFKIVLRGRVVLHRNLADDLKYLEYIMYKPQSGGHVEGVVVTTIGFLKEAPDVNIHGFNVYHKNRLILPFWRVVSYSDSRGRGVVGILEASFIEPTHNKQDFERTSLFQKLEARLKDMTWEYWDYHCGLVGYQVKKQLRVSAAYQTPSNITVPAGTEHTHMLKQCFPSVRAYQQSNQQNNQQAIVLLEENTKLRAKCSEYEKREEELNLKATGLRMDIQEVEHEILRLLDELKYLEAVKQLAEAMEHLMGSKQVDCIFTMKNL 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30287083 30315269 + ClCG06G017100.2 Cla06g01670 275862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01670 691 PANTHER HISTIDINE KINASE-LIKE ATPASE, C-TERMINAL DOMAIN-CONTAINING PROTEIN-RELATED 20 394 - -
Cla06g01670 691 PANTHER HISTIDINE KINASE-LIKE ATPASE, C-TERMINAL DOMAIN-CONTAINING PROTEIN-RELATED 416 577 - -
Cla06g01670 691 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 20 394 IPR045261 GO:0016887
Cla06g01670 691 MobiDBLite consensus disorder prediction 55 89 - -
Cla06g01670 691 Pfam Morc6 ribosomal protein S5 domain 2-like 416 551 IPR041006 -
Cla06g01670 691 MobiDBLite consensus disorder prediction 55 91 - -
Cla06g01670 691 Gene3D - 132 270 IPR036890 -
Cla06g01670 691 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 146 246 - -
Cla06g01670 691 Coils Coil 618 666 - -
Cla06g01670 691 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 144 358 IPR036890 -
Cla06g01670 691 PANTHER HISTIDINE KINASE-LIKE ATPASE, C-TERMINAL DOMAIN-CONTAINING PROTEIN-RELATED 599 661 - -
Cla06g01670 691 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 416 577 IPR045261 GO:0016887
Cla06g01670 691 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 599 661 IPR045261 GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01670 - - - cmo:103502402 1065.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01670 Cla-Chr6:30287083 Cla06g01760 Cla-Chr6:31102657 2.04E-134 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g776 . . . . . . . . . . Cma10g00121 . Car10g00108 . . . . Bhi02g00461 Tan09g2260 . . Hepe09g0210 . . Cla06g01670 Cam06g1859 Cec06g1908 Cco06g1913 Clacu06g1815 Cmu06g1756 Cre06g2573 . Cone16ag0091 . . . . . . . . . . . . . Bma08g00093 . Cmo10g00125 . . . . . . Cpe18g00848 . . . . . . . . . . . . . . Lsi06g01563 Csa01g00140 . Cme02g01985
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003763 0 11 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 6 2 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01670 Cla_Chr06 FPKM 7.9875 11.922529 0.384679 1.243657 0.0 0.0 0.355119 1.373501 1.169868 2.11912