Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01673 ATGACCTTGCTACAACTGTTCAATCATGACATCAAGTATGTTGAGTGGAGAAAGAAGCACGAAATGTTATTCCCATTCCCACAATTCTTGAGATATTTTTTCTCCACAACTGAAAATTATTGGTGTAACAGACTTTGTCCTAGAAATGAATATGGAATTGATATTGGATTTTTAAATATATGTTTGTGGACATCAGCCAGACGAGGTGGGATGACAGTTTTAGGAAAGGTTGCTGTTCCAAAACCTATAAACTTACCCAGTCAAAGGTTAGAAAACCATGGTTTGGACCCTAATGTGGAAATTGTACCCAAGGGTACCCTCAGTTGGGGCAATAAATCAACTTCATCTGCAACAAATGCATGGGGTTCCGCATCTGTTTCTCCAAATACAGATAGTGCTTCTGGTTCACCAAGCCATTTCTGTGGTCGCCCTTCATCTGCTGGAGGTGGCACTCGTCCGTCAACAGCTGGCAGTGACAGGTCCCACGAACCTCATGCTAATGCATGGGGACCAAGTTCTAGACCATCATCTGCATCTGGACCTGTGACATTAAGCCATGCATCACTCACATCCTTGCGTCCTCACAGTGCCGAAACTAAATCTAGTAGCTCACAATTGTCACGATTTGCAGAGACTTCTGAAAATCCAGTGGCTTGGAATTCTGCTGTGACTACAGAGAAAGTGGTATCAGGCTTGCAACCTGGAACGTTGCCATGCAAGAGTGATGGGTTTTCTTTGACGTCTGGAGATTTTCCTACACTGGGTTCAGAGAAAGAAAGTGTAGGAAAGGATGCTGAGTCACAAGATAATAGGTCTAATGGAGGAGCTACGATGAAAGAGAGGACTGAAACTTCGGCAATTGATGATCCTAAAAATGTGACCACAAGTGTTGCAAGTGCTAATTCCTGGAGAAGTGATAATCTTCCACACAACGATGATGGATCTAGGCCAAATGTAGAGAAATGGCTGGGGCATCCCCAACCTTACCCTGGTGCAAATATTCCTCCCCCACATTATGACGCCTGGCATGGTTCTCCAGTAAACAATCCTCAAGGTGGTGTATGGTATAGAGGTCCTCCACAAGGAGGTCCTCCATATCGAACTCCAGTTGCTCCTGGTAATTTCCCGCTGGATCCATTTATGTATTATCCTCCACAGATTCCCCCTGGTGGCCTTCCCAATCCCCAGCCTCCTCATGGAACTGGACCCAGGGGACACCATCCTAAAACTGGAGATATATACAGACCACCTATGCATGATGGTTTTATTCACCCAGGCATGTCAATTAGACCTGGATTTTACCCAGGTCCAGTTACCTATGATGGATATTTTCGACCTCCCATGGGCTACTGCAATTCAAATGATAGAGATGCTCCATTTATGGGACTGCCTGCTGGGCCTACTGGGCCTGCTGGACCTGCTGTTTACAACAGGTTCTTGGGCCAAGGCCAGAGTGCCTCTGAGCCTGCAAGTTCCCATGGCTTATCTAGTGGAAAGGGTATGGTTCCAGAACAAGCAGAATCTGGTCTTCCTTGTGATAATCAAGGACAATACAAGGTTCTTCTGAAGCAGCAGGGAAATGTAAATGGTAAGAACGAAGAAAAAAATATGATAAACTCAACAACCACTAATCAATTGATTCTTGAGAAGGCTGACCAACAGAGGGTGTCTCCATGGGAGAATGACTGGGAACATAAAAAGGAAGTTGATTTGAGGAGGAGAAAATTGGGGGTGGAACCGTATTCTCAGGCTTCTGCCAACCAAGAAGCTCAATCTTCTGAAAGTATGAAAGCCAAATCTCATGGAAACACGAGGACTGGTGATGGGTTACTAGAAAAATCGGATGCTGCTTCTTCTGGTTTCTCTGAAGTTCCCAAATCACTGGTTACTTCTGCAAAAGATTCAAGTCTGATTCAGAAGATAGAGGGATTAAATGCAAAAGCACGGGCTTCTGATGTGCGACATGATGGTGCCCCTATTTGTAGCAGGGATGAGCCAGATGAGTTTCAATCTGATGATAAGCACTCTGATCCTTTTGTTGCCCATGAAGTGGGTGTGAGTGCTGTTTTTCCTGAAAACAGAGATTTTAAAGAAGTCGTAGATCCTGCCTCCAGTGAATTAAGCTTGTCCACTGTAGATAGGAACGTTAAATTTCATGGTGGAGCACCTGTCCACAGGAGGCCTAATCGTGGAATGCAAGGGAGAAGTGATCATCATGGCCGAGGAAAAGGCAATGCACAGGAGGTAGATGGGTGGCATAAAAGACCTCTGTTGGACTCCCCAGGCATGATGGCAACTCCCAACCAGGAAAGTTTGGTGCTTGACAGGGACCACAATGCTTTAGGAGCTATCAATAAGGCCAAGCCATTTTCTTCAGATAGCCTTGGAGATGGGCCTGCCCCATCCATAGGTGATTCAAAAGATAGTCAAGCTCAGCGTACAAAGATGAGAGAGCTAGCAAAGCAACGCACCAAACAATTGCAGGAGGAAGAGGAGGAAAGGACTAGAAAACAGAGGGCTAGGGCCTTGGCAAAACTTGAAGAGTTGAACAGACGTACAGTAGCTGGGGAGGGGCCAAATCAGTGGTCTGACACTAATAATGATGCTATAAGAAATAAGATAGAAGAACCTCGCAATCCCAGTAATTCAAGAACGCTTGGTACTATATCTGGAGAGCATACCACAGTTTCTGATCTACATGTGGCTACTAATGATAGCGAGTCAACTGTGGGCACTAATAAAAATTCTCCCATTGTATCAGGAGATACATCATCGAAGAAACCAAGTAATGGCAATAAGGAACAGGTTGTGGCACATAATGAATTGAGATCTTTGGAGCAGGAGGTAAGTATTTCTGATGCTGCTCAAAATAAGAATGCTTCTGAGGTGAATGGGGGCAGTGCATCCTTGAAGCACAAGCGTACAGGAAATAAACAAAAACCAAATATTCCATCGGAAAAGATTCCCCATTTAATTAAGGAATCAAAAGGTCATTTCGTTGTAGCTGACATTCATACAGTTGCAGAGGAGTCGAGCAATATCATTACAGATTCTGTTGCTGAATTTTCAACACATACAAAAAAGAAAAATAACAAGAGTGGGAAGAACAGGCACAAAGTGGAAGAGGCCTTGATAACTGCATCATCACCTCAGATTTCAAAAGAAACAGATCTTATAACGGAATCTGATAAACCAAAGGCTTCTCAATCTGTAATGGATCCACCTTCAGATCCACAACAGCCAATTAATAGAGATGAAAATCAGTTCAGAGAGCAGCAACCTCTGTTACCAGTTGTAGAGACCCTTGGCAAAGGTAACGGTCAGTGGAAGTCTCAGCATTCTCGCAGGATGCCAAGAAATGCTCAAAATAGACCAGGAGAAAAGATCCATGGCAATGATTCTGTTGTCTGGGCCCCTGTGAGATCTCTCAACAAATGTGAGGTTACCGATGAAACTATTCAGAAGAGTGAAGCAGAGTCTGTTGCTTCATCTGTAAAGACTGACAATCAAGTGCAGAATATTCCAAAAAATAAGCGAGCTGAAAGGGAGATATATGTACCGAAACCAGTAGCCAAAGAAATGGCGCAGCAAGGAACTATCCATCAAGATATTTCCTCTATGAACCAGGCACCTGATGATAATAAGGCAGATTCTAGTTCTCAAAGTTCTGATAATACTAGATCTGCTGGTGCTGTTTCTGTCAATGTGGGATTTTCCACAGATCACAGGAACGGGGATGGCAGGCACCATAAACAAAGCAAGGCACATTCATCATGGCGACAACGGGGAGCAACAGAATATGGGCAAGGCTTACAAGATCAATCTTCTTATGTTTCAAATGCTGGTAGTTATGTTCAAAAGTCAATTGAATATCAATTACCTGAGAAGGCTACCGGAAGCTCTGCCAATGAGTTCGCTGGTCTGGTTGATGAGTGGGATCCACCTGATGGATGGAATGATCCCAACTATTCAGCCTCTATCCAACCTGTCACTGCAGCTGTTGGGAGAGACCAGGGAGTGACAGGCAGGGGAAAACGATCCCAATCTAAGGGAAACAAGGCTGTAGGGAACAATTATGATTTAAATGAAAAGAAACTTAGAAGTGGAGACAACGAAAAAATTTCTTCTGGATCTGAAGTGCTCGAGGCAGATCAAAAAGATGTATCTGCTGCTGCTGCTAAAGAAATTCGGGGTGTTGGGGAACGTTCAACATCTCATTGGCAACCCAAATCGCGGATGGTCCAACCTCTCAGTAATCAAAATGTTGATGCTGAAGCTGCACAGGCTAATAAAATGGGACCTAGACAATCCTCACATCGCACAAAAACAAGTGATGATGTGGCCCAAAACCAGTATGATATGTCCACTGGTGCAAGAACCATCACAGAAGAGGGATCAATTGCTGGTCATCATGGGGCCAGGGGAGAGAAGAAAATTTCTTCCCGCAAGGAGCGTCCTTACTCCCCAAACCAAGGGCCTACCCATACAGTAGAGGTTGCTCCTGCAAATACAGATGTCAGACGTGAGCAACAGTTGCCTACGTTTTACCATAAAAGTGGTGAGAACAATAACCGTTATGGGAGAGGGTCGGAATCTCGTTGGGAAAGGAATAACTCTCAACATCATAAGCAGCAGCATTATCCACCTGCTAATAGAGACAGGCAAAGACAAAATCTGCAGTACGAGTACCAACCAGTTGGGCCACACAATAGTAAACCGAACATGGACAGACCTAAGGATACGACTCAGCATTCAGGCTCAAGGGCAGTAGGACTAGGAACCCGATTTGACGGTGCAGGAGAAAACTGTTTGGAGTTGGATGGAGGAGGATGGTCGGACTTGTTTATTTTGTAG 4854 44.46 MTLLQLFNHDIKYVEWRKKHEMLFPFPQFLRYFFSTTENYWCNRLCPRNEYGIDIGFLNICLWTSARRGGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGNKSTSSATNAWGSASVSPNTDSASGSPSHFCGRPSSAGGGTRPSTAGSDRSHEPHANAWGPSSRPSSASGPVTLSHASLTSLRPHSAETKSSSSQLSRFAETSENPVAWNSAVTTEKVVSGLQPGTLPCKSDGFSLTSGDFPTLGSEKESVGKDAESQDNRSNGGATMKERTETSAIDDPKNVTTSVASANSWRSDNLPHNDDGSRPNVEKWLGHPQPYPGANIPPPHYDAWHGSPVNNPQGGVWYRGPPQGGPPYRTPVAPGNFPLDPFMYYPPQIPPGGLPNPQPPHGTGPRGHHPKTGDIYRPPMHDGFIHPGMSIRPGFYPGPVTYDGYFRPPMGYCNSNDRDAPFMGLPAGPTGPAGPAVYNRFLGQGQSASEPASSHGLSSGKGMVPEQAESGLPCDNQGQYKVLLKQQGNVNGKNEEKNMINSTTTNQLILEKADQQRVSPWENDWEHKKEVDLRRRKLGVEPYSQASANQEAQSSESMKAKSHGNTRTGDGLLEKSDAASSGFSEVPKSLVTSAKDSSLIQKIEGLNAKARASDVRHDGAPICSRDEPDEFQSDDKHSDPFVAHEVGVSAVFPENRDFKEVVDPASSELSLSTVDRNVKFHGGAPVHRRPNRGMQGRSDHHGRGKGNAQEVDGWHKRPLLDSPGMMATPNQESLVLDRDHNALGAINKAKPFSSDSLGDGPAPSIGDSKDSQAQRTKMRELAKQRTKQLQEEEEERTRKQRARALAKLEELNRRTVAGEGPNQWSDTNNDAIRNKIEEPRNPSNSRTLGTISGEHTTVSDLHVATNDSESTVGTNKNSPIVSGDTSSKKPSNGNKEQVVAHNELRSLEQEVSISDAAQNKNASEVNGGSASLKHKRTGNKQKPNIPSEKIPHLIKESKGHFVVADIHTVAEESSNIITDSVAEFSTHTKKKNNKSGKNRHKVEEALITASSPQISKETDLITESDKPKASQSVMDPPSDPQQPINRDENQFREQQPLLPVVETLGKGNGQWKSQHSRRMPRNAQNRPGEKIHGNDSVVWAPVRSLNKCEVTDETIQKSEAESVASSVKTDNQVQNIPKNKRAEREIYVPKPVAKEMAQQGTIHQDISSMNQAPDDNKADSSSQSSDNTRSAGAVSVNVGFSTDHRNGDGRHHKQSKAHSSWRQRGATEYGQGLQDQSSYVSNAGSYVQKSIEYQLPEKATGSSANEFAGLVDEWDPPDGWNDPNYSASIQPVTAAVGRDQGVTGRGKRSQSKGNKAVGNNYDLNEKKLRSGDNEKISSGSEVLEADQKDVSAAAAKEIRGVGERSTSHWQPKSRMVQPLSNQNVDAEAAQANKMGPRQSSHRTKTSDDVAQNQYDMSTGARTITEEGSIAGHHGARGEKKISSRKERPYSPNQGPTHTVEVAPANTDVRREQQLPTFYHKSGENNNRYGRGSESRWERNNSQHHKQQHYPPANRDRQRQNLQYEYQPVGPHNSKPNMDRPKDTTQHSGSRAVGLGTRFDGAGENCLELDGGGWSDLFIL 1617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30327469 30337365 - ClCG06G017130.2 Cla06g01673 275865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01673 1617 MobiDBLite consensus disorder prediction 118 209 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 810 852 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1063 1090 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 786 990 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1024 1133 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1155 1174 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1469 1484 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1551 1567 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 118 141 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 879 937 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1258 1275 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 581 602 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1363 1380 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1105 1119 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 579 623 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1528 1550 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 235 337 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 240 254 - -
Cla06g01673 1617 Coils Coil 813 852 - -
Cla06g01673 1617 PANTHER PROTEIN MODIFIER OF SNC1 1 63 1581 IPR038808 -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1154 1275 - -
Cla06g01673 1617 PANTHER PROTEIN MODIFIER OF SNC1 1 63 1581 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 170 209 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 730 750 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 288 308 - -
Cla06g01673 1617 Pfam BAT2 N-terminus 66 187 IPR009738 -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1507 1527 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 388 411 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1404 1462 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 718 750 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1295 1598 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 945 972 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1198 1240 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 1342 1356 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 388 402 - -
Cla06g01673 1617 MobiDBLite consensus disorder prediction 484 513 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01673 - - - csv:101207575 2612.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01673 Cla_Chr06 FPKM 0.0 0.0 138.099533 135.674713 1.67914 1.491501 1.621032 0.193851 0.0 0.0