Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01678 ATGGCGCCTACTCCACCGATAGCATTGCTTCCATGGCGACCCCCCATTAGTTTCATGTATAGGTGGAGAGAACTGATTGGAATCAAGGTTTGTATGGAAACGGGCTATCTCGGTTGTCCGTCTTCCTTACAACAGTGCGAAACCCTTGTGGTATTCAAAACACAAAAGGCTGAAACAATGACTGACCCAACAGGTTCATCGGCTTCAGATAAGGGCCACGAACCCTCTTCTTCATCGGACCAGAAAAGTACTAAACGGGATTTTTCCACTGCAATTTTGGAACGCAAGAAGTCTCCAAATCGTTTAGTTGTTGATGAGGCTATAAATGACGATAACTCTGTGGTTTCTTTGCATCCTGCTACCATGGAAAAGCTACAGTTCTTTAGAGGAGATACTATTTTATTAAAGGGAAAGAAGCGGAGAGATACGGTGTGTATTGTACTTGCTGATGAACAATGCGAAGAGTCAAAAATCAGAATGAATAAAATTGTACGAGCCAATCTCAGAGTTCGTCTTGGAGATGTTGTATCTGTCCATCAGTGTCCTGATGTGAAGTATGGAAAGCGGATTCATGTCCTCCCTGTTGATGATACAATTGAGGGTGTTACTGGCAACCTATTTGATGCATATTTGAAACCTTATTTCTTGGAAGCATATCGACCGGTAAGGAAGGGTGACCTGTTCTTAGTCCGGGGTGGAATGAGAAGTGTTGAGTTCAAGGTCATAGAAACAGACCCTGGTGAATACTGTGTTGTTGCACCTGATACCGAGATTTTCTGTGAGGGAGAGCCCATCAAACGTGAGGATGAGGAGAGATTAAATGAAGTTGGATATGATGATGTTGGAGGTGTCAGGAAGCAAATGGCTCAGATTCGTGAACTAGTGGAATTACCACTTAGACACCCACAACTCTTCAAATCAATTGGTGTAAAGCCTCCAAAAGGAATATTGCTATATGGGCCTCCAGGATCTGGAAAGACTCTTATAGCAAGAGCTGTTGCTAATGAGACAGGTGCATTCTTCTTTCTGATTAATGGGCCAGAAATAATGTCAAAGTTAGCTGGTGAGAGTGAAAGTAATCTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATGCCCCCTCAATTATATTTATTGATGAGCTTGATTCCATTGCACCAAAGAGGGAGAAAACACATGGAGAAGTGGAAAGGCGTATCGTGTCCCAACTTCTTACCTTGATGGATGGCCTCAAGACTCGAGCACATGTTATTGTTATTGGAGCAACTAATAGACCCAACAGCATTGACCCTGCTTTGAGGAGATTTGGAAGATTTGATCGGGAGATTGATATTGGTGTACCAGATGAAGTAGGACGATTGGAAGTCCTTAGGATCCATACAAAGAACATGAAACTTGCAGAGGATGTTGATCTTGAGAGAGTTGCAAGGGATACCCATGGTTATGTTGGTGCCGATCTTGCCGCTCTTTGTACTGAAGCAGCACTCCAGTGTATTCGGGAGAAAATGGATGTCATCGACTTGGAAGATGAAACAATAGATGCTGAGGTTTTGAATTCCATGGCTGTAACCAATGAACATTTCCAAACTGCTTTAGGGTCTTCTAATCCATCGGCCTTGCGGGAAACTGTTGTGGAGGTTCCAAACGTGTCATGGGATGATATTGGAGGGTTGGAAAATGTTAAAAGAGAGCTCCAGGAGACTGTCCAATACCCAGTGGAGCATCCTGAGAAGTTTGAAAAATTTGGCATGTCACCATCTAAAGGTGTTCTCTTTTATGGTCCCCCTGGCTGTGGTAAAACGCTACTTGCTAAGGCAATTGCCAACGAATGCCAGGCTAACTTTATAAGTGTGAAAGGACCTGAGTTGCTGACGATGTGGTTTGGTGAAAGTGAGGCAAATGTGAGAGAGATATTTGACAAGGCTCGTCAGTCGGCTCCTTGTGTACTATTTTTCGATGAACTCGATTCTATAGCAACTCAGCGCGGTAGTTCTGTTGGAGATGCTGGTGGTGCAGCAGATAGAGTCTTGAACCAACTTCTTACAGAAATGGATGGCATGACTGCAAAGAAGACTGTGTTTATAATTGGGGCAACAAACAGGCCAGACATTATAGACCCCGCACTGCTGAGGCCAGGACGTCTGGACCAATTAATATACATCCCACTCCCTGACGAGTCTTCTCGTCTTCAAATTTTCAAAGCATGTCTGCGAAAGTCGCCAGTGGGAAAAGATGTCAATCTAACAGCTCTTGCACGGTACACTCATGGCTTTAGTGGAGCTGATATCACTGAAATATGTCAGCGTGCCTGCAAATATGCCATTAGAGAAAATATTGAGAAGGATCTCGAAAGGGAGAGAAAGCAAAATGAAAACTCGGAAGCCATGGAAGAAGACGACATAGATGAAGTCTCGGAGATAAAGGCAGCACATTTTGAGGAGTCAATGAAGTATGCTCGCCGAAGTGTCAGCGATGCAGACATCAGGAAGTACCAGCTCTTTGCTCAGACCCTACAGCAATCTCGTGGGATTGGTTCCGAGTTTCGGTTCCCTGATCGAACGGACAATGTAGCATCAGGAGCTGCCGACCCATTTGCTTCCACCATGGCTGCTGGAGATGATGATGATCTTTACAGCTGA 2637 44.33 MAPTPPIALLPWRPPISFMYRWRELIGIKVCMETGYLGCPSSLQQCETLVVFKTQKAETMTDPTGSSASDKGHEPSSSSDQKSTKRDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQFFRGDTILLKGKKRRDTVCIVLADEQCEESKIRMNKIVRANLRVRLGDVVSVHQCPDVKYGKRIHVLPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPVGKDVNLTALARYTHGFSGADITEICQRACKYAIRENIEKDLERERKQNENSEAMEEDDIDEVSEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGIGSEFRFPDRTDNVASGAADPFASTMAAGDDDDLYS 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30366821 30372296 + ClCG06G017170.1 Cla06g01678 275870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01678 878 ProSitePatterns AAA-protein family signature. 416 434 IPR003960 GO:0005524|GO:0016887
Cla06g01678 878 Pfam Cell division protein 48 (CDC48), domain 2 203 266 IPR004201 -
Cla06g01678 878 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 102 838 IPR005938 GO:0016787
Cla06g01678 878 MobiDBLite consensus disorder prediction 844 878 - -
Cla06g01678 878 MobiDBLite consensus disorder prediction 59 87 - -
Cla06g01678 878 Gene3D - 447 538 - -
Cla06g01678 878 SUPERFAMILY ADC-like 97 181 IPR009010 -
Cla06g01678 878 PANTHER AAA-FAMILY ATPASE 76 852 - -
Cla06g01678 878 Coils Coil 775 795 - -
Cla06g01678 878 Pfam Cell division protein 48 (CDC48), N-terminal domain 101 182 IPR003338 -
Cla06g01678 878 Gene3D - 281 445 IPR027417 -
Cla06g01678 878 SMART CDC48_2_2 201 267 IPR004201 -
Cla06g01678 878 Gene3D - 539 722 IPR027417 -
Cla06g01678 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 835 IPR027417 -
Cla06g01678 878 SMART CDC48_N_2 101 184 IPR003338 -
Cla06g01678 878 CDD AAA 555 722 - -
Cla06g01678 878 CDD AAA 282 445 - -
Cla06g01678 878 Pfam AAA+ lid domain 744 783 IPR041569 -
Cla06g01678 878 Pfam AAA+ lid domain 468 510 IPR041569 -
Cla06g01678 878 Gene3D - 78 183 - -
Cla06g01678 878 Gene3D - 184 280 - -
Cla06g01678 878 SUPERFAMILY Cdc48 domain 2-like 183 275 IPR029067 -
Cla06g01678 878 SMART AAA_5 585 724 IPR003593 -
Cla06g01678 878 SMART AAA_5 312 448 IPR003593 -
Cla06g01678 878 Pfam ATPase family associated with various cellular activities (AAA) 589 722 IPR003959 GO:0005524|GO:0016887
Cla06g01678 878 Pfam ATPase family associated with various cellular activities (AAA) 316 445 IPR003959 GO:0005524|GO:0016887
Cla06g01678 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 537 IPR027417 -
Cla06g01678 878 Gene3D - 726 834 - -
Cla06g01678 878 MobiDBLite consensus disorder prediction 59 74 - -
Cla06g01678 878 ProSitePatterns AAA-protein family signature. 692 710 IPR003960 GO:0005524|GO:0016887
Cla06g01678 878 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 76 852 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01678 K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase - csv:101205889 1581.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00882 Cla-Chr1:11047682 Cla06g01678 Cla-Chr6:30366821 9.73E-48 dispersed
Cla01g01045 Cla-Chr1:16175061 Cla06g01678 Cla-Chr6:30366821 2.99E-42 dispersed
Cla01g02113 Cla-Chr1:35414589 Cla06g01678 Cla-Chr6:30366821 4.81E-34 dispersed
Cla04g00912 Cla-Chr4:24108654 Cla06g01678 Cla-Chr6:30366821 0 dispersed
Cla05g02389 Cla-Chr5:35438332 Cla06g01678 Cla-Chr6:30366821 4.62E-26 dispersed
Cla06g01678 Cla-Chr6:30366821 Cla09g00577 Cla-Chr9:5386389 7.36E-84 dispersed
Cla08g00860 Cla-Chr8:21027822 Cla06g01678 Cla-Chr6:30366821 3.78E-23 dispersed
Cla06g01678 Cla-Chr6:30366821 Cla10g01920 Cla-Chr10:35062114 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g791 . . . . . . . . . . . Cma11g00084 . Car11g00077 . . Cpe04g01568 Bhi02g00487 . . . . . . Cla06g01678 Cam06g1866 . Cco06g1920 Clacu06g1821 Cmu06g1763 Cre06g2580 . . Cone13ag0155 . . . . . . . . . . . . . . . Cmo11g00085 . . . . . . . . . . . . . . . . . . . . Lsi06g01567 Csa01g00131 Chy02g02596 Cme02g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000638 2 4 4 4 4 3 5 3 3 3 3 2 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 2 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01678 Cla_Chr06 FPKM 0.733212 1.757685 1.735117 2.191846 1.235874 1.113697 1.469458 2.0065 2.303881 2.134