Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g01679 | ATGAAACAGGCTTCAAATCTGTTAATCACTGGTTCTGGTATTGCCAAACTTGACAGGATAAATTTAGTTGTAATGCCTGTAAATTCATGGACCCTCCCCTCATCTATCCTAATCCTCTGTTTTTCAGTCTTATATCCCTTCCTTTCTCTAAGAACTTCCGCCATTAATGAACAGGGTCAAGCTCTACTCAATTGGAAGCTAAGTTTGAATGGATCAAACGAGGCTCTATATAATTGGAACCCCAAAAATGAAAATCCATGTGGGTGGTTTGGAATCACTTGCAACAGAAACAGAGAAGTAGTGGAAGTAGTACTGAGGTATGTGAACTTACCTGGAAAGCTTCCGTTGAATTTCTCTCCATTGTCATCCTTGAACAGGCTCGTCTTGTCTGGAGTGAACCTCACTGGTTCAATTCCTAAAGAGATCGGTGGTCTTACCCAGCTGCATACCTTGGAACTCAGTGACAATGGCCTAACTGGAGCAATCCCAAGTGAAATATGCGCTTTGGTAAATCTCGAACAGCTTTACCTGAATTCGAACCAACTCGAAGGGTCAATACCTGCAGGGATCGGGAATCTTACAAACTTAAAGGAGCTCATTCTCTATGACAATCAGTTAAGTGGTGAAATTCCAATTAGTATAGGAAACTTGAAGCAGCTTGAAGTGATTAGAGCCGGAGGAAACAAGAACTTACTTGGTCCTGTGCCGGAAGAAATTGGTAATTGTAGCAGTTTGGTGATTCTTGGTTTGGCTGAAACAAGCATCTCCGGCTTTCTTCCAGCTAGTCTTGGCCGGCTCAAGAAACTTCAAACATTAGCAATCTATACTGCACTTCTCTCCGGCCAGATTCCTCATGAACTTGGCGACTGCACTGAGCTTCAAAACATCTATCTCTATGAGAACTCGCTCTCCGGCTCGATCCCCAGCTCGTTAGGAAGGTTAAAAAATCTTCAGAGTGTGCTAATATGGCAGAACAATTTGGTCGGTGTTATACCGCCGGAGCTAGGTTGGTGTGACCAATTATTCGTCATCGACCTTTCAATTAACTCCCTGACGGGAAACATTCCTTCGACATTTGGGAACTTAACATTGCTTCAAGAATTGCAACTGAGTACTAATCAATTATCCGGTGAGATACCGAAGGAGATCGGAAACTGTCTGAGAATCACTCACATCGAGCTTGATAATAATCAGCTCACTGGTACGATTCCCTCTGAATTGGGAAATCTCACCAATCTTACATTGCTTTTCTTGTGGCAAAACAAGCTCGAGGGAAGTATTCCGCCCACCATTTCGAATTGTCGCAATCTCGAGGCGTTGGATTTATCACTGAATGCCTTGACAGGTTCAGTTCCGACGGGAATTTTCCAGTTGAAGAAACTCTCCAAGCTTCTGCTCCTTTCCAACAACCTCTCCGGTGTGATACCGCCGACAATAGGTAATTGTTCGTCTCTGTTTCGGTTTCGAGCTAATAACAACAAGCTCGCCGGAGAAATTCCGCCGGAGATTGGAAATTTGAAGAAGTTGGTTTTTCTAGACCTCGGAAACAATCACCTCACTGGAGCGTTGCCTCCGGAGATTTCCGGCTGTCGAAATTTGACGTTCCTCGATTTGCATTCCAACTCTCTAAAATTTCTTCCAGAAGAATTCGGCCACCTTTCTTCCCTCCAGTACGTTGATCTCTCAAATAATTTAATCGAAGGGACGCCGAATCCGAGTTTTGGATCTTTCAACTCGCTCACGAAACTCGTTCTCTCAAACAACCGCTTCTCGGGGCCTATACCGACTGAAATCGGTTCTTGCTTGAAACTTCAGTTACTGGATTTGAGTTGCAATCAGCTTTCCGGAAACATTCCTTCAAGCTTAGGCAAGATTCCTTCATTAGAAATTGGTCTCAATCTGAGCTTAAACCAACTAACCGGCGAGATTCCGTCAGAGTTTGCAAATTTTAACAAGCTAGGGTCATTGGACCTCTCTTACAACCAACTCTCTGGCGACCTCCACATTCTCACAGACCTGCAGAATCTCGTAGTCCTCAATGTATCCCACAACAATTTCTCAGGACGCGTACCAGAGACGCCATTCTTCACGCAACTCCCTCTGAGTGTCCTCTCGGGTAACCCGGACTTGTGCTTCGCCGGCGAAAAATGCTACAGAGACAACCACAGCAGCGGCGGTCGCCACACGCTAGCGGCTCGAGTGGCCATGGTGGTGTTACTGTGCACTGCGTGCGCACTGCTATTAGCAGCAGTTTATATCATTCTCAAAGATAGACATTCATGTCGAAGATGCTTCAATGGGTCCCGCGATGAAGATCCAGACGCCGCCTTCGATAGCGACTTGGAGCTTGGCTCAGGTTGGGAAGTGACATTATACCAGAAGCTCGATCTCTCAATCTCTGACGTAATCAAGTGCTTAACGCCGGCCAATGTCATCGGCCGCGGCAAGACCGGCGTGGTGTACAGAGCCTGCATCTCATCAGGTCTAATAATCGCCGTGAAGCGATTCCGATCATCGGATAAATTCTCGGCAGCGGCGTTTTCATCCGAAATCGCAACATTGGCGAGGATCCGGCACCGGAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAGTTGCTGTTCTACGATTACTTGCCAAATGGGAATTTGGGCGCGTTATTGCACGAAGGGAATGGGCGCGTGGGGCTGGACTGGGACAGTAGATTCAAGATAGCGCTGGGAGTGGCGGAGGGATTGGCTTATTTGCACCACGATTGCGTGCCGGCGATATTGCACCGGGACGTTAAGGCTCACAATATTCTGTTAGGGGATCGCTACGAGGCGTGTTTAGCGGACTTTGGGCTCGCCCGCTTGGTCGAAGATGGTCCAAGCGGTTCGTCTTCCGCGAACCCCCAGTTCGCTGGCTCCTACGGCTATTTTGCACCTGAGATAATAACAGGCAAAAAGCCAGCGGATTCGTCATTTGCCGAGGGCCAGCACGTGATTCAATGGGTGAGAGACCATTTAAAGAAGAAGAAGGATCCGGTTTTGATATTGGATCCGAAACTTCAGGGTCAACCCGACCCGCAGATCCAGGAGATTCTACAAGCATTAGGAATCTCTTTACTCTGCACCAGCGACCGCTCCGAAGACCGGCCGACGATGAAAGACGTGGCGGCTCTTTTACGAGAGATCCAACAGGACCAGCCGGCGACAGCGGCGGAGGCCGCCGACAAGCCGCCACGAAAGAATAGCAACGCGACAAGCTTTGATACAACGACGTCGTTTTCGTCTTCGTCTTCTACGGCTCCTGCGAGTCATTTGCTTTTCACTTTGCCCCTTCAAGAATCGTCGCGTTGTTCTTATGCTTCGTTGTCATCGTCTGGCGCGTATATTCCACGCAAGCAATAA | 3402 | 47.88 | MKQASNLLITGSGIAKLDRINLVVMPVNSWTLPSSILILCFSVLYPFLSLRTSAINEQGQALLNWKLSLNGSNEALYNWNPKNENPCGWFGITCNRNREVVEVVLRYVNLPGKLPLNFSPLSSLNRLVLSGVNLTGSIPKEIGGLTQLHTLELSDNGLTGAIPSEICALVNLEQLYLNSNQLEGSIPAGIGNLTNLKELILYDNQLSGEIPISIGNLKQLEVIRAGGNKNLLGPVPEEIGNCSSLVILGLAETSISGFLPASLGRLKKLQTLAIYTALLSGQIPHELGDCTELQNIYLYENSLSGSIPSSLGRLKNLQSVLIWQNNLVGVIPPELGWCDQLFVIDLSINSLTGNIPSTFGNLTLLQELQLSTNQLSGEIPKEIGNCLRITHIELDNNQLTGTIPSELGNLTNLTLLFLWQNKLEGSIPPTISNCRNLEALDLSLNALTGSVPTGIFQLKKLSKLLLLSNNLSGVIPPTIGNCSSLFRFRANNNKLAGEIPPEIGNLKKLVFLDLGNNHLTGALPPEISGCRNLTFLDLHSNSLKFLPEEFGHLSSLQYVDLSNNLIEGTPNPSFGSFNSLTKLVLSNNRFSGPIPTEIGSCLKLQLLDLSCNQLSGNIPSSLGKIPSLEIGLNLSLNQLTGEIPSEFANFNKLGSLDLSYNQLSGDLHILTDLQNLVVLNVSHNNFSGRVPETPFFTQLPLSVLSGNPDLCFAGEKCYRDNHSSGGRHTLAARVAMVVLLCTACALLLAAVYIILKDRHSCRRCFNGSRDEDPDAAFDSDLELGSGWEVTLYQKLDLSISDVIKCLTPANVIGRGKTGVVYRACISSGLIIAVKRFRSSDKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGALLHEGNGRVGLDWDSRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEACLADFGLARLVEDGPSGSSSANPQFAGSYGYFAPEIITGKKPADSSFAEGQHVIQWVRDHLKKKKDPVLILDPKLQGQPDPQIQEILQALGISLLCTSDRSEDRPTMKDVAALLREIQQDQPATAAEAADKPPRKNSNATSFDTTTSFSSSSSTAPASHLLFTLPLQESSRCSYASLSSSGAYIPRKQ | 1133 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 30378810 | 30386716 | - | ClCG06G017180.2 | Cla06g01679 | 275871 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g01679 | 1133 | Gene3D | Transferase(Phosphotransferase) domain 1 | 882 | 1075 | - | - | |
| Cla06g01679 | 1133 | Gene3D | Phosphorylase Kinase; domain 1 | 790 | 881 | - | - | |
| Cla06g01679 | 1133 | Gene3D | Ribonuclease Inhibitor | 390 | 457 | IPR032675 | - | |
| Cla06g01679 | 1133 | SMART | LRR_typ_2 | 145 | 168 | IPR003591 | - | |
| Cla06g01679 | 1133 | SMART | LRR_typ_2 | 531 | 552 | IPR003591 | - | |
| Cla06g01679 | 1133 | SMART | LRR_typ_2 | 314 | 338 | IPR003591 | - | |
| Cla06g01679 | 1133 | SMART | LRR_typ_2 | 553 | 576 | IPR003591 | - | |
| Cla06g01679 | 1133 | SMART | LRR_typ_2 | 435 | 458 | IPR003591 | - | |
| Cla06g01679 | 1133 | SMART | LRR_typ_2 | 410 | 434 | IPR003591 | - | |
| Cla06g01679 | 1133 | SMART | LRR_typ_2 | 193 | 217 | IPR003591 | - | |
| Cla06g01679 | 1133 | SMART | LRR_typ_2 | 362 | 386 | IPR003591 | - | |
| Cla06g01679 | 1133 | SMART | LRR_typ_2 | 506 | 530 | IPR003591 | - | |
| Cla06g01679 | 1133 | SMART | LRR_typ_2 | 169 | 192 | IPR003591 | - | |
| Cla06g01679 | 1133 | SMART | LRR_typ_2 | 673 | 706 | IPR003591 | - | |
| Cla06g01679 | 1133 | SMART | LRR_typ_2 | 577 | 601 | IPR003591 | - | |
| Cla06g01679 | 1133 | MobiDBLite | consensus disorder prediction | 1066 | 1100 | - | - | |
| Cla06g01679 | 1133 | ProSiteProfiles | Leucine-rich repeat profile. | 532 | 553 | IPR001611 | GO:0005515 | |
| Cla06g01679 | 1133 | SUPERFAMILY | RNI-like | 355 | 693 | - | - | |
| Cla06g01679 | 1133 | MobiDBLite | consensus disorder prediction | 1079 | 1100 | - | - | |
| Cla06g01679 | 1133 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 927 | 939 | IPR008271 | GO:0004672|GO:0006468 | |
| Cla06g01679 | 1133 | PANTHER | OS01G0170300 PROTEIN | 26 | 1079 | - | - | |
| Cla06g01679 | 1133 | Pfam | Leucine rich repeat N-terminal domain | 56 | 95 | IPR013210 | - | |
| Cla06g01679 | 1133 | Gene3D | Ribonuclease Inhibitor | 311 | 389 | IPR032675 | - | |
| Cla06g01679 | 1133 | ProSiteProfiles | Protein kinase domain profile. | 806 | 1129 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cla06g01679 | 1133 | Gene3D | Ribonuclease Inhibitor | 458 | 719 | IPR032675 | - | |
| Cla06g01679 | 1133 | ProSiteProfiles | Leucine-rich repeat profile. | 652 | 674 | IPR001611 | GO:0005515 | |
| Cla06g01679 | 1133 | SMART | serkin_6 | 806 | 1079 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cla06g01679 | 1133 | ProSitePatterns | Protein kinases ATP-binding region signature. | 812 | 834 | IPR017441 | GO:0005524 | |
| Cla06g01679 | 1133 | Gene3D | Ribonuclease Inhibitor | 209 | 310 | IPR032675 | - | |
| Cla06g01679 | 1133 | Pfam | Leucine rich repeat | 531 | 590 | IPR001611 | GO:0005515 | |
| Cla06g01679 | 1133 | Pfam | Protein kinase domain | 810 | 986 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cla06g01679 | 1133 | Gene3D | Ribonuclease Inhibitor | 55 | 208 | IPR032675 | - | |
| Cla06g01679 | 1133 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 26 | 1079 | - | - | |
| Cla06g01679 | 1133 | SUPERFAMILY | L domain-like | 76 | 421 | - | - | |
| Cla06g01679 | 1133 | SUPERFAMILY | Protein kinase-like (PK-like) | 798 | 1059 | IPR011009 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g01679 | - | - | - | csv:101206847 | 1979.53 |
WGDs- Genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla01g01317 | Cla06g01679 | CCT |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla06g00736 | Cla-Chr6:9562383 | Cla06g01679 | Cla-Chr6:30378810 | 1.33E-64 | dispersed | |
| Cla06g01679 | Cla-Chr6:30378810 | Cla09g00922 | Cla-Chr9:9586601 | 0 | dispersed | |
| Cla09g02099 | Cla-Chr9:38517820 | Cla06g01679 | Cla-Chr6:30378810 | 0 | transposed | |
| Cla01g01317 | Cla-Chr1:26502600 | Cla06g01679 | Cla-Chr6:30378810 | 0 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g203 | . | . | . | . | . | . | . | . | . | . | . | Cma11g00083 | . | . | . | . | . | . | . | . | . | . | . | . | Cla06g01679 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cmo11g00084 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | |
| Vvi17g792 | . | . | . | . | . | . | . | . | . | Cmo18g00141 | Cma10g00113 | Cma11g00083 | Car10g00102 | . | . | . | . | Bhi02g00489 | . | . | . | . | . | . | Cla06g01679 | . | . | . | . | . | . | Cone2ag0922 | Cone16ag0085 | . | . | Lsi02g00394 | Csa01g00871 | . | Cme12g01675 | . | . | . | . | . | . | . | . | . | Cmo10g00117 | Cmo11g00084 | . | Cma18g00183 | . | . | . | Cpe18g00852 | Bhi08g01644 | . | . | . | . | . | . | Cla01g01317 | . | . | . | . | . | . | Lsi06g01569 | Csa01g00130 | Chy02g02597 | Cme02g01993 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0002837 | 0 | 2 | 0 | 0 | 0 | 2 | 3 | 2 | 2 | 2 | 2 | 2 | 3 | 2 | 2 | 3 | 2 | 2 | 3 | 2 | 2 | 2 | 1 | 2 | 2 | 3 | 2 | 3 | 2 | 1 | 56 |
Regulatory proteins
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 80662 | PF00069 | Pkinase | 1.50E-31 | CL0016 | Cla | PK |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cla06g01679 | Cla_Chr06 | FPKM | 9.971534 | 10.368 | 14.216412 | 13.720644 | 17.397869 | 18.319614 | 16.180525 | 11.074397 | 9.607067 | 10.000662 |