Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01682 ATGAGCATTGGGTTTTTAAAAACCAAAAAAATGAAAATGGTGTTTTCAGTTTCCATAATTCTAAGTTTGGCAAAACTGATGAAGGATACTCTTAGATACTTGGCAGGAATCCCAGGCCCCAGTGGCTATGGCTCCAAATCCACTGCTGAACAAGTCACTCTTTTTTCTTCTTCTAATTTCACTTCTTCCACTACTACTTCTCAACTCACTGCCATAATCACTGGGGCAACTTCAGGAATTGGGGCAGAAACAGCAAGAGTATTGGCAAAGAGAGGAGTAAAAATAGTGATGCCAGCAAGAGACTTGAAAAAGGCAGCTCAAGTAAAAGAAGCAATTCAAAAAGAAAGCCCTGAGGCTGAGATTATTGTGTGTGAGATTGATCTCAGTTCATTGGCTTCTGTCCAAAGATTTTGTAATGAGTTTCTTGCTCTTGGACTCCCACTTAACATTCTCATAAATAATGCTGGAGTCTTCTCTAAGAATTTGGAGTTCTCTGAAGACAAAGTTGAGTTGACATTTGCAACAAATTATTTGGGACATTATTTACTGACAGAGAGGCTGTTAGAGAAAATGATAGAAACAGCAGCCAAGACAGGAATAGAAGGAAGGATTATCAACGTTTCTTCAGTGGTTCATTGCTGGGTGAAGAAAGATGGTTTAAGCTTTCGTCAAATGGTCAACCCAAACAATTATAATGGCACTCGTGCATATGCTCAGTCAAAACTGGCCAATATCTTGCATGCTAAGGAAATATCAAGACAACTTCAGGGAAGAAATGCCAGAGTCACCATAAATGCAGTACATCCAGGGATTGTAAAAACTGCTATCATAAGAGCTCACAAGGGCTTTATCACAGATTCTTTGTTTTTTATGGCATCAAAGTTGCTAAAAACTACAAGTCAGGGAGCATCAACAACATGCTATGTAGCACTGAGTTCGCAAACAGAAGGAAAGAGTGGAAAATTTTATGCAGATTGTAACGAGACTAACTGCTCATCCCTAGCCAATGATGAGTTAGAAGCACAAAAGTTATGGACTCAAACTCGCAACTTAATCAATAGGCGACTAAGCAAACTTTCTTCCTAA 1086 39.04 MSIGFLKTKKMKMVFSVSIILSLAKLMKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSSNFTSSTTTSQLTAIITGATSGIGAETARVLAKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCNEFLALGLPLNILINNAGVFSKNLEFSEDKVELTFATNYLGHYLLTERLLEKMIETAAKTGIEGRIINVSSVVHCWVKKDGLSFRQMVNPNNYNGTRAYAQSKLANILHAKEISRQLQGRNARVTINAVHPGIVKTAIIRAHKGFITDSLFFMASKLLKTTSQGASTTCYVALSSQTEGKSGKFYADCNETNCSSLANDELEAQKLWTQTRNLINRRLSKLSS 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30398380 30403464 - ClCG06G017210.2 Cla06g01682 275874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01682 361 Pfam short chain dehydrogenase 70 211 IPR002347 -
Cla06g01682 361 CDD retinol-DH_like_SDR_c_like 70 345 - -
Cla06g01682 361 PRINTS Glucose/ribitol dehydrogenase family signature 146 157 IPR002347 -
Cla06g01682 361 PRINTS Glucose/ribitol dehydrogenase family signature 260 277 IPR002347 -
Cla06g01682 361 PRINTS Glucose/ribitol dehydrogenase family signature 237 256 IPR002347 -
Cla06g01682 361 PRINTS Glucose/ribitol dehydrogenase family signature 196 212 IPR002347 -
Cla06g01682 361 PRINTS Glucose/ribitol dehydrogenase family signature 70 87 IPR002347 -
Cla06g01682 361 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 157 IPR002347 -
Cla06g01682 361 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 210 IPR002347 -
Cla06g01682 361 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 237 256 IPR002347 -
Cla06g01682 361 PANTHER RETINOL DEHYDROGENASE 30 356 - -
Cla06g01682 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 70 330 IPR036291 -
Cla06g01682 361 Gene3D - 58 357 - -
Cla06g01682 361 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 30 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01682 - - - cmo:103502388 622.468
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g01319 Cla06g01682 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00712 Cla-Chr1:8317951 Cla06g01682 Cla-Chr6:30398380 4.10E-17 dispersed
Cla04g01229 Cla-Chr4:27394404 Cla06g01682 Cla-Chr6:30398380 7.11E-24 dispersed
Cla06g01682 Cla-Chr6:30398380 Cla10g01994 Cla-Chr10:35760210 4.28E-100 dispersed
Cla01g00184 Cla-Chr1:1840493 Cla06g01682 Cla-Chr6:30398380 1.42E-123 transposed
Cla06g01792 Cla-Chr6:31326772 Cla06g01682 Cla-Chr6:30398380 3.98E-08 transposed
Cla09g00956 Cla-Chr9:10049976 Cla06g01682 Cla-Chr6:30398380 1.70E-11 transposed
Cla10g00091 Cla-Chr10:941197 Cla06g01682 Cla-Chr6:30398380 4.78E-61 transposed
Cla11g01325 Cla-Chr11:26752534 Cla06g01682 Cla-Chr6:30398380 7.06E-14 transposed
Cla01g01319 Cla-Chr1:26521514 Cla06g01682 Cla-Chr6:30398380 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g794 Blo04g00726 . . . Bpe12g00629 Bpe13g00248 Bma06g00212 . Cmo13g00903 . Cma10g00111 . Car10g00100 . . Cpe20g00254 . . . . . . . . Cla06g01682 Cam06g1869 Cec06g1918 Cco06g1923 Clacu06g1824 Cmu06g1767 Cre06g2583 Cone2ag0923 Cone16ag0084 Cone13ag0157 Cone19ag0156 Lsi02g00396 . . . Blo13g00099 . Bda11g01661 Bda14g00802 . Bpe15g00646 Bma03g00776 . . Cmo10g00115 . Cma13g00871 . Car13g00713 . . Cpe18g00854 Bhi08g01646 . . Lac10g0476 . . . Cla01g01319 Cam01g1411 Cec01g1442 Cco01g1481 Clacu01g1384 Cmu01g1293 Cre01g1248 Lsi06g01573 Csa01g00128 Chy02g02599 Cme02g01995
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002718 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 4 2 2 1 1 2 2 2 2 2 3 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01682 Cla_Chr06 FPKM 32.407692 27.168589 30.278109 32.189362 54.082371 40.054798 48.284477 36.524857 35.083855 37.770626