Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01688 ATGGTGGGTTCGGTAGGGTTGTGTGAGCCTAGCCTAGTTGAAATGTACAGGGTTTTGCTTCACTCTTCTTCATCAGATCAGCTCTTAAACCAAACCTCAAAAATTTTTAGTTTATCAAAAGGAAAGGAAGAAAAGGGGTTTAAAGCTTTCTTACTTGAAAGGGCAAGGATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCCAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCTGTGAACTCTCTTGCCTATGAGGCTGAGGCCCGAGTTCGGGACCCAGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTCCAAAGGCAAGTTCAAAGGCTCCAAAAGGAACTAGACGCTGCGAATGCTGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAACCTTGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA 723 44.81 MVGSVGLCEPSLVEMYRVLLHSSSSDQLLNQTSKIFSLSKGKEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI 240
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 30476051 30479027 - ClCG06G017270.2 Cla06g01688 275880
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01688 240 Coils Coil 145 172 - -
Cla06g01688 240 ProSiteProfiles LOB domain profile. 65 166 IPR004883 -
Cla06g01688 240 Pfam Lateral organ boundaries (LOB) domain 66 163 IPR004883 -
Cla06g01688 240 PANTHER ELONGATED PETIOLULE 1 57 239 - -
Cla06g01688 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 57 239 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla01g01323 Cla06g01688 CCT
Cla01g01323 Cla06g01688 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01688 Cla-Chr6:30476051 Cla11g01084 Cla-Chr11:21962719 2.80E-59 dispersed
Cla02g01308 Cla-Chr2:27234597 Cla06g01688 Cla-Chr6:30476051 6.95E-50 transposed
Cla09g00064 Cla-Chr9:619172 Cla06g01688 Cla-Chr6:30476051 9.10E-29 transposed
Cla09g01802 Cla-Chr9:35578162 Cla06g01688 Cla-Chr6:30476051 4.09E-30 transposed
Cla01g02437 Cla-Chr1:38009851 Cla06g01688 Cla-Chr6:30476051 4.63E-39 transposed
Cla01g01323 Cla-Chr1:26581837 Cla06g01688 Cla-Chr6:30476051 7.48E-67 wgd
Cla10g01326 Cla-Chr10:28218498 Cla06g01688 Cla-Chr6:30476051 3.48E-77 wgd
Cla06g01688 Cla-Chr6:30476051 Cla09g01879 Cla-Chr9:36482539 1.21E-61 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61342 PF03195 LOB 5.30E-42 No_clan Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01688 - - cmos:111430134 329.717