Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g01688 | ATGGTGGGTTCGGTAGGGTTGTGTGAGCCTAGCCTAGTTGAAATGTACAGGGTTTTGCTTCACTCTTCTTCATCAGATCAGCTCTTAAACCAAACCTCAAAAATTTTTAGTTTATCAAAAGGAAAGGAAGAAAAGGGGTTTAAAGCTTTCTTACTTGAAAGGGCAAGGATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCCAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCTGTGAACTCTCTTGCCTATGAGGCTGAGGCCCGAGTTCGGGACCCAGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTCCAAAGGCAAGTTCAAAGGCTCCAAAAGGAACTAGACGCTGCGAATGCTGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAACCTTGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA | 723 | 44.81 | MVGSVGLCEPSLVEMYRVLLHSSSSDQLLNQTSKIFSLSKGKEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI | 240 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 30476051 | 30479027 | - | ClCG06G017270.2 | Cla06g01688 | 275880 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g01688 | 240 | Coils | Coil | 145 | 172 | - | - | |
| Cla06g01688 | 240 | ProSiteProfiles | LOB domain profile. | 65 | 166 | IPR004883 | - | |
| Cla06g01688 | 240 | Pfam | Lateral organ boundaries (LOB) domain | 66 | 163 | IPR004883 | - | |
| Cla06g01688 | 240 | PANTHER | ELONGATED PETIOLULE 1 | 57 | 239 | - | - | |
| Cla06g01688 | 240 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 57 | 239 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla01g01323 | Cla06g01688 | CCT | |
| Cla01g01323 | Cla06g01688 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla06g01688 | Cla-Chr6:30476051 | Cla11g01084 | Cla-Chr11:21962719 | 2.80E-59 | dispersed | |
| Cla02g01308 | Cla-Chr2:27234597 | Cla06g01688 | Cla-Chr6:30476051 | 6.95E-50 | transposed | |
| Cla09g00064 | Cla-Chr9:619172 | Cla06g01688 | Cla-Chr6:30476051 | 9.10E-29 | transposed | |
| Cla09g01802 | Cla-Chr9:35578162 | Cla06g01688 | Cla-Chr6:30476051 | 4.09E-30 | transposed | |
| Cla01g02437 | Cla-Chr1:38009851 | Cla06g01688 | Cla-Chr6:30476051 | 4.63E-39 | transposed | |
| Cla01g01323 | Cla-Chr1:26581837 | Cla06g01688 | Cla-Chr6:30476051 | 7.48E-67 | wgd | |
| Cla10g01326 | Cla-Chr10:28218498 | Cla06g01688 | Cla-Chr6:30476051 | 3.48E-77 | wgd | |
| Cla06g01688 | Cla-Chr6:30476051 | Cla09g01879 | Cla-Chr9:36482539 | 1.21E-61 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61342 | PF03195 | LOB | 5.30E-42 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g01688 | - | - | cmos:111430134 | 329.717 |