Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01690 ATGGCCGATGACATTTACGGCGGCGCTTCACTTCCCTCAGGTCCAGATGGTCGGAAACGCCGTGTGACCTACTTCTACGAGCCCACAATCGGCGATTACTATTACGGACAAGGCCATCCGATGAAACCTCACCGTATCCGCATGGCCCATAACCTCATTGTTCACTACGGCCTTCACCGTCGGATGGAGATCAACCGGCCCTGCCCTGCCGGTACTGAGGACATCCGGAGGTTTCACTCTGATGACTATGTCGATTTCCTCGCCTCCGTCAGTCCCGAAACGTTGTCGGATCACACTTTCTCTCGCCATCTCAAGCGCTTCAATGTTGGTGAGGACTGCCCTGTTTTTGATGGCTTATTCGGCTTCTGCCAGGCCTCTGCTGGCGGCTCCATTGGTGCTGCCGTCAAGCTCAATCGCGGCGATGCTGATATTGCTATCAATTGGGCTGGTGGACTTCATCATGCTAAGAAGTCTGAGGCTTCCGGTTTCTGTTACGTCAATGATATTGTATTGGGCATTCTTGAGCTGCTGAAGTATCACAAGCAATCTTCATTTTCTAAGCTGCTCAGTATCAATGTGCAGCGTGTACTATATATTGACATTGATGTCCATCATGGTGATGGCGTGGAGGAGGCATTTTACACTACTGACAGAGTAATGACGGTCTCTTTTCATAAATTTGGGGATTTCTTTCCAGGGACTGGGCACATTAAGGATGTTGGAGTAGGGACTGGTAAAAACTATGCCCTTAATGTCCCCTTAAATGATGGAATGGATGATGACAGTTTTCGTGGTCTGTTTAGGCCACTAATTCAAAAAGTTATGGAGGTGTATCAGCCAGATGCAGTTGTACTCCAATGTGGAGCTGATTCATTGTCTGGTGATAGGTTGGGGTGCTTCAACTTATCTGTGAAGGGCCATGCAGATTGTCTTCGTTTCTTGAGATCATTTAATGTCCCTTTAATGGTATTAGGTGGAGGAGGATATACAATCCGCAATGTTGCTCGCTGCTGGTGTTACGAGACAGCGGTTGCTGTTGGAGTTGAACCAGACAATAAATTGCCTTACAATGAGTATTTCGAGTATTTTGGACCTGATTACGCACTTCACATAGAACCATCCAACATGGAGAATCTAAATTCACCTAAAGATATGGAAAAGATAAGGAACACCCTGCTCGAGCAACTCTCTAGACTACCACATGCACCCAGTGTACCTTTCCAGATGACTCCCTCGTCAGAAGTTCCTGAAGAGGTGGAAGAGAACATTGAACGTAGACCCAAACGCCGTATCTGGAATGGTGAGGATTATGATTCTGATTCTGAAGAAAACCGAAAGCGACCAAACAATAGTGAAGGGCCTGGTGTAAATAATCTGACGAGAGCCCATCTTGCTTGCGACCCATTTTACGCAACTAGAATTGTTAGGCTCTACTCCATCAATGGTAGACTCGACCATGCCCGCAATGTGTTCGACAAAGCTCCCAACCGAAGTGTCTACCTCTTTAACTCAATCATTCGAGCTTACGCGAAAGCCAATAAATTCGGGGATGCATTATCTCTGTTCTTTACAATGTTTGGAACTGATACGCTACCCGATAACTTCACCTATTCATGCATCATAAGGGCATGCTCTGAGAACTTCCATAGAGAATGGCTGAAACTTGTTCATGGACGAGTTTTAGCATCTGGGCTTGGATTAGATCCTATCTGTTGCAGCGCCCTAGTGACTGCATACTCAAATCTAGACCTTATTGAAGATGCAAGCAAGGTGTTTGATGGAATGCCTCATCGAGACTTGGTTATGTGGAATTCAATCATTTCTGGTTTTGGGTACTGCGGGTATTGGAATCAGGGGCTTTTGTTATTTTCTAGGATGAGGAATCTTGGAGAACATCCGGATGGATACACGGTAGTTGGTGTGGCATTGTGTATAGCAGAACCCAGCCTACTGAGCACTGGCAAAGGTATTCATGGATTTTGCCTCAAATGTAGTTTTGACTCTAATGAGCATGTCGCTAGTGCACTTGTGAGTATGTATTCGAGGTGTAATTGCATGGATTCGGCATATTTGGTTTTTAGTAGTTTGTTACAGGCTGATTTAGTTACATGGTCTGCTTTAATAACTGGGTATTCTCAAGCTGGTGATTTTAGTAAGGCACTGTTCTTCTTTCAGAAACTGAATATGCAGGGTAAGAAGCCGGATTCCATTTTGATTGCCAGCATTTTGGCTGCTACTGCTCAATCAACCAACATAAGGCATGGAATTGAGATACATGGTTTTGTTCTTCGACAAGGGATAGAATCAGACGAGATGGTATGCTCTTCTCTCATAGACATGTATTCCAAGTGTGGTTATTTGAGTTTAGGAATTCGTGTCTTTCATATTATGCCACAAAAAAGTATCTTGACATACAATTCTGTAATATGGGGAATTGGTTTGCATGGACTTGCATCAAAGGCATTGGAAGTGTTTAAGGAGTTGATGGACATTGGTTTAGTGCCTAACGAGTCCACTTTCTCTGCTCTTCTTTGTGCATGCTGCCATGTTGGTCTTAACTCTGTTGGCAAGGAGATTTTCATAAGGATGAAAGATGAGTTTTGCATCAAATACAGAACACAACATTATGTTTACATTGTAAAACTTCTTGGAATGACTGGCGAGTTAGAAGAGGCTTATAATCTTGTCCTGTCCTTACCAGAGCCTGTAGACTCTGGTATATGGGGAGCTCTACTGTCCTGCTGTGATGCTTGTGGGAACCTTGAACTGGCTGAAGTTGTTGCTCGGCAGCTCATAGAAACCGATCCTGAAAAAACTGCTTATAAAGTAATGCTCTCTAATATTTATGCTGGAGAAGGGAGATGGGATGATGTGAAGAAGTTAAGGGATACAATGACTGAAAAGGAACGAGGAAAATTGCCCGGGCTTAGCTGGATTTGA 2940 44.29 MADDIYGGASLPSGPDGRKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEINRPCPAGTEDIRRFHSDDYVDFLASVSPETLSDHTFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYHKQSSFSKLLSINVQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGVGTGKNYALNVPLNDGMDDDSFRGLFRPLIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYALHIEPSNMENLNSPKDMEKIRNTLLEQLSRLPHAPSVPFQMTPSSEVPEEVEENIERRPKRRIWNGEDYDSDSEENRKRPNNSEGPGVNNLTRAHLACDPFYATRIVRLYSINGRLDHARNVFDKAPNRSVYLFNSIIRAYAKANKFGDALSLFFTMFGTDTLPDNFTYSCIIRACSENFHREWLKLVHGRVLASGLGLDPICCSALVTAYSNLDLIEDASKVFDGMPHRDLVMWNSIISGFGYCGYWNQGLLLFSRMRNLGEHPDGYTVVGVALCIAEPSLLSTGKGIHGFCLKCSFDSNEHVASALVSMYSRCNCMDSAYLVFSSLLQADLVTWSALITGYSQAGDFSKALFFFQKLNMQGKKPDSILIASILAATAQSTNIRHGIEIHGFVLRQGIESDEMVCSSLIDMYSKCGYLSLGIRVFHIMPQKSILTYNSVIWGIGLHGLASKALEVFKELMDIGLVPNESTFSALLCACCHVGLNSVGKEIFIRMKDEFCIKYRTQHYVYIVKLLGMTGELEEAYNLVLSLPEPVDSGIWGALLSCCDACGNLELAEVVARQLIETDPEKTAYKVMLSNIYAGEGRWDDVKKLRDTMTEKERGKLPGLSWI 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30490117 30495528 - ClCG06G017290.1 Cla06g01690 275882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01690 979 CDD HDAC_classI 25 345 - -
Cla06g01690 979 PANTHER HISTONE DEACETYLASE 7 448 - -
Cla06g01690 979 Gene3D Tetratricopeptide repeat domain 739 856 IPR011990 GO:0005515
Cla06g01690 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Cla06g01690 979 Gene3D Tetratricopeptide repeat domain 857 979 IPR011990 GO:0005515
Cla06g01690 979 Gene3D Tetratricopeptide repeat domain 554 647 IPR011990 GO:0005515
Cla06g01690 979 SUPERFAMILY TPR-like 481 959 IPR011990 GO:0005515
Cla06g01690 979 SUPERFAMILY Arginase/deacetylase 20 398 IPR023696 -
Cla06g01690 979 Pfam E motif 920 979 IPR046848 -
Cla06g01690 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 801 835 IPR002885 -
Cla06g01690 979 Pfam PPR repeat family 498 544 IPR002885 -
Cla06g01690 979 Pfam PPR repeat family 801 849 IPR002885 -
Cla06g01690 979 MobiDBLite consensus disorder prediction 418 449 - -
Cla06g01690 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Cla06g01690 979 PRINTS Histone deacetylase superfamily signature 280 290 IPR000286 -
Cla06g01690 979 PRINTS Histone deacetylase superfamily signature 150 173 IPR000286 -
Cla06g01690 979 Pfam Histone deacetylase domain 39 343 IPR023801 -
Cla06g01690 979 Gene3D Tetratricopeptide repeat domain 456 553 IPR011990 GO:0005515
Cla06g01690 979 Gene3D Histone deacetylase domain 18 406 IPR037138 -
Cla06g01690 979 MobiDBLite consensus disorder prediction 402 458 - -
Cla06g01690 979 TIGRFAM PPR: pentatricopeptide repeat domain 601 634 IPR002885 -
Cla06g01690 979 TIGRFAM PPR: pentatricopeptide repeat domain 702 735 IPR002885 -
Cla06g01690 979 TIGRFAM PPR: pentatricopeptide repeat domain 501 532 IPR002885 -
Cla06g01690 979 Pfam PPR repeat 702 727 IPR002885 -
Cla06g01690 979 Pfam PPR repeat 571 598 IPR002885 -
Cla06g01690 979 Pfam PPR repeat 601 630 IPR002885 -
Cla06g01690 979 PRINTS Histone deacetylase signature 169 185 IPR003084 GO:0004407|GO:0016575
Cla06g01690 979 PRINTS Histone deacetylase signature 128 148 IPR003084 GO:0004407|GO:0016575
Cla06g01690 979 PRINTS Histone deacetylase signature 107 124 IPR003084 GO:0004407|GO:0016575
Cla06g01690 979 PRINTS Histone deacetylase signature 41 58 IPR003084 GO:0004407|GO:0016575
Cla06g01690 979 PRINTS Histone deacetylase signature 74 92 IPR003084 GO:0004407|GO:0016575
Cla06g01690 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 599 633 IPR002885 -
Cla06g01690 979 PANTHER HISTONE DEACETYLASE 6 7 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01690 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - cpep:111779824 925.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00316 Cla-Chr2:3062487 Cla06g01690 Cla-Chr6:30490117 0 dispersed
Cla02g02138 Cla-Chr2:36446725 Cla06g01690 Cla-Chr6:30490117 1.49E-156 dispersed
Cla05g01825 Cla-Chr5:30159414 Cla06g01690 Cla-Chr6:30490117 6.30E-18 dispersed
Cla06g01544 Cla-Chr6:29017629 Cla06g01690 Cla-Chr6:30490117 8.94E-27 dispersed
Cla06g01690 Cla-Chr6:30490117 Cla04g00366 Cla-Chr4:13638318 8.88E-13 dispersed
Cla06g01690 Cla-Chr6:30490117 Cla02g01045 Cla-Chr2:21342579 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g806 . . . Bda15g00544 Bpe12g00667 . . . . . . Cma11g00075 Car10g00090 Car11g00067 . . Cpe04g01577 Bhi02g00504 Tan09g2293 . . Hepe09g0228 . . Cla06g01690 . . . . . . Cone2ag0926 Cone16ag0079 . . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00105 Cmo11g00076 . . . . . Cpe18g00862 . . . . . . . . . . . . . . Lsi06g01584 Csa01g00119 Chy02g02608 Cme02g02005
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014459 0 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01690 Cla_Chr06 FPKM 7.829114 9.472429 8.918896 7.995523 9.778665 12.896195 8.752752 14.703564 14.945032 15.037253