Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01699 ATGGCCATGGATCCCAACCCCAAAAGTTTCCCGATCCTTTCTTACGTCATGGCCAGAATCCCCTCTCTCAGCCCTCGAACGCCGGCCACTGAATTCGACATCGAACAACCTGCATCTCCGGCCTCCCGCCGCACTCCTTCCGATCCTTCCTCATCCTCCTCCCGAATCGTCCATGATATGCCTCATCTCTCCGACCCCAAGGTTTTGGCTTCTATGACTACCGCTATATCTGATGTTGCTCAGACCCGATCCGTCCTCAAAACCCTTGGGGAGAGACCAGACCATGAGGCTGTTGATACTGCCAAGGCTAAGCTCGCTGAGGTAGAAGTTAATTTGTCTGCCAAGCTTCAGGAAATCGTGCTTTCGTCTAGGCCGGCGGATGTCGAGTTGCTTGAGTGGAGGGCGCATCTTGCTGAGAAAGAGAACGAGTGCCGCCAGGCGGCGGATAAAGAGAAGCAGGGGTATAAGGCAATTGTGCAACTGGATGAGATGCACGAGGCGTATGAGAAGATGTTGAAGGAAGCAGAGGAGAGGTTGGTGAAGATTTACGAGTCGGCTGAGAGAGGGCTGCAGGAGGAAGAACACTTGGATCCAGTTAGCGAGGAGGTCAATGAGGAGGTTGCGAGGATTCTTCAGGACGCGAATGAGAAGGAAATGGATCGAATTAGTCTCTCCGGCCGACGCTTGCGGTTCTTGCCTGAAGGATTTGGACGCATTCGGGGATTGGTTGTGCTTGATATCTCCAGCAATCAACTACAGAGTCTGGATGAATGGATTGTGGCTAAATTGGGGGCCCTGATTGAGGATGCCATTCTCTTTGGTTTCGTATTTGGAGATATTATCCCCGATTCAATATCTGGCTTAGAAAATCTTGAGGAGCTGAATGCCTCATCCAATCTCCTGGAGTCACTGCCCGACTCAATTGGGTTATTACAAAAGCTGAAACTCCTGAATGTCTCTGGGAACAAGTTGCATGCCCTTCCTGACACAATATGCCATTGCAGGTCTTTGGTGGAGTTGGATGTGAGCTTCAACAGTCTAACGTACTTGCCAACAAATATTGGCCATGAACTGGTGAATTTGGAGAAGCTTGCTATCCAGTTAAACAAGATACGCTCACTTCCCTCTTCTCTTTGTGGTATGAGCTCTTTGCGTTATCTGGATGCGCATTTCAACGAGCTTCATGGCCTTCCTCAGGCAATTGGGAAACTGACACAACTTGAGTATCTCAACCTAGGCAGTAATTTTACTGACCTTACTGAACTTCCACATACTTTTGGTGATTTATCCAGCCTTAAGGAACTTGATCTCAGCAATAACCAGATTCACGCTCTACCTGATACATTTGGCCATCTTGAGAATTTAAAGAAACTAAACTTGGAGCAAAATCCTCTTACAATTCCACCAATGGAAGTGGTTAACAAAGGACCGGATGCTGTGAGGACATTCATGTCCAAAAGATGGCTTGAAATTCTGGAAGAGGAAGATAGAAAAAGAACTCTTGAAATGGATGAACAGACGCAGACTGGATGGCTGACACGAAGCACCTCTTGGTTGAAGACTTACGTTTCTGGCGTTTCAGAGACGGTGTCTGGTATCGTAGGATCTCCCAAATCGCCAAGAGACCCGTATCTCGATCAACAGCTATAA 1650 48.0 MAMDPNPKSFPILSYVMARIPSLSPRTPATEFDIEQPASPASRRTPSDPSSSSSRIVHDMPHLSDPKVLASMTTAISDVAQTRSVLKTLGERPDHEAVDTAKAKLAEVEVNLSAKLQEIVLSSRPADVELLEWRAHLAEKENECRQAADKEKQGYKAIVQLDEMHEAYEKMLKEAEERLVKIYESAERGLQEEEHLDPVSEEVNEEVARILQDANEKEMDRISLSGRRLRFLPEGFGRIRGLVVLDISSNQLQSLDEWIVAKLGALIEDAILFGFVFGDIIPDSISGLENLEELNASSNLLESLPDSIGLLQKLKLLNVSGNKLHALPDTICHCRSLVELDVSFNSLTYLPTNIGHELVNLEKLAIQLNKIRSLPSSLCGMSSLRYLDAHFNELHGLPQAIGKLTQLEYLNLGSNFTDLTELPHTFGDLSSLKELDLSNNQIHALPDTFGHLENLKKLNLEQNPLTIPPMEVVNKGPDAVRTFMSKRWLEILEEEDRKRTLEMDEQTQTGWLTRSTSWLKTYVSGVSETVSGIVGSPKSPRDPYLDQQL 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30581440 30584882 + ClCG06G017390.2 Cla06g01699 275891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01699 549 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 260 - -
Cla06g01699 549 Coils Coil 98 118 - -
Cla06g01699 549 Gene3D Ribonuclease Inhibitor 154 268 IPR032675 -
Cla06g01699 549 Gene3D Ribonuclease Inhibitor 276 473 IPR032675 -
Cla06g01699 549 Coils Coil 130 150 - -
Cla06g01699 549 SUPERFAMILY L domain-like 213 467 - -
Cla06g01699 549 Coils Coil 158 185 - -
Cla06g01699 549 Pfam Leucine rich repeat 406 465 IPR001611 GO:0005515
Cla06g01699 549 Pfam Leucine rich repeat 335 394 IPR001611 GO:0005515
Cla06g01699 549 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 280 533 - -
Cla06g01699 549 SMART LRR_typ_2 358 380 IPR003591 -
Cla06g01699 549 SMART LRR_typ_2 452 475 IPR003591 -
Cla06g01699 549 SMART LRR_typ_2 311 334 IPR003591 -
Cla06g01699 549 SMART LRR_typ_2 381 403 IPR003591 -
Cla06g01699 549 SMART LRR_typ_2 404 428 IPR003591 -
Cla06g01699 549 SMART LRR_typ_2 429 451 IPR003591 -
Cla06g01699 549 SMART LRR_typ_2 288 310 IPR003591 -
Cla06g01699 549 SMART LRR_typ_2 239 262 IPR003591 -
Cla06g01699 549 SMART LRR_typ_2 335 357 IPR003591 -
Cla06g01699 549 ProSiteProfiles Leucine-rich repeat profile. 290 311 IPR001611 GO:0005515
Cla06g01699 549 PANTHER LEUCINE-RICH REPEAT-CONTAINING 280 533 - -
Cla06g01699 549 Coils Coil 200 220 - -
Cla06g01699 549 ProSiteProfiles Leucine-rich repeat profile. 431 452 IPR001611 GO:0005515
Cla06g01699 549 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 260 - -
Cla06g01699 549 PRINTS Leucine-rich repeat signature 429 442 - -
Cla06g01699 549 PRINTS Leucine-rich repeat signature 242 255 - -
Cla06g01699 549 MobiDBLite consensus disorder prediction 40 58 - -
Cla06g01699 549 MobiDBLite consensus disorder prediction 26 62 - -
Cla06g01699 549 SMART LRR_bac_2 288 307 - -
Cla06g01699 549 SMART LRR_bac_2 404 425 - -
Cla06g01699 549 SMART LRR_bac_2 311 330 - -
Cla06g01699 549 SMART LRR_bac_2 334 353 - -
Cla06g01699 549 SMART LRR_bac_2 358 377 - -
Cla06g01699 549 SMART LRR_bac_2 429 448 - -
Cla06g01699 549 SMART LRR_bac_2 381 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01699 - - - csv:101222309 907.131
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01699 Cla-Chr6:30581440 Cla11g01127 Cla-Chr11:22972883 7.87E-52 dispersed
Cla01g01166 Cla-Chr1:20191138 Cla06g01699 Cla-Chr6:30581440 4.63E-08 transposed
Cla05g02586 Cla-Chr5:37108171 Cla06g01699 Cla-Chr6:30581440 1.04E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01699 Cla_Chr06 FPKM 12.285714 13.07958 16.809946 15.521142 15.65281 13.362337 17.315193 17.597269 17.551428 19.172033