Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01700 ATGGACGAAAATGGCAGCAGGAAATTACATAATCTTGAAGCCCACTTGCTTTCAGAGTCCCAGAAGGATTTGAAGATTAGATTCAATGGAGAGAAATGGGAGGAAGTGATTACAGAGGTAAAGAAGCAGATGGGGCTGGCGGGTCCTTTGGTTTTGGTCAGTTTTTTGCAGTATAGTTTGCAGCTGATATCTATTATGTTCATTGGCCATCTTGGAGAGCTTCAACTTTCTGGTGCTTCAATGGCTTTCTCCTTTGCTGGAGTCACCGGCTTTAGTCTCTTGTTGGGAATGGGCAGTGCATTAGAGACATTATGTGGACAAGCATATGGAGGAAAACAATATGAGATGCTTGGGATTCATATGCAGAGAGCCATGGTTGTTCTTTCACTTATCTGCATTCCCATAGCCCTTTTGTGGGCTTCCATTGAACAAATCTTGACCATTCTTAAACAGGATCCTCTGATTTCCGAGCAAGCTGGGATTTATGGCAAATGGCTCATCCCCAGCATTATCCCCTATGGCCTCCTTCAGTGTCAATTTAGATTCTTACAGACTCAACATCTCACTTCTCCATTGTTGCTTTCCACTGCAGCTTCAAGTTCCATTCATCTTTTGGTTTGTTGGGGTTTGGTTTTTGGATTTGGATTTGGCATTAAGGGAGCTGCTTTCTCCACTGCCATTACTTATTGGATCAATGTCTTCATTTTGGCTTTCTATATCAAGTTCTCTCCTCATTGTCAAAAGACTTGGACTGGCTTCTCCATTCACGGAATCAAGAATTTGATTTCCTTCTTGGCTTTGGCAGTCCCTTCTTCTCTCATGGTTTGCTTGAGCACAAGTTCGCTGGTTTTCAGAATCGCCTATGGTTTCGGCAGTGCTGTGAGCACAAGAGTATCAAATGAGTTAGGGGCAGGAAAGGCAATGGCAGCTAAGGTAGCAGTGAAGGTAGTGGTGGTTTTGGGTTTAGCAGAAGGAATTGGATTAGGAATTTTACTAATTTCACTTAGAAACGTATGGGGTTTTCTGTTCACAAATGAATTACAAGTTGTTGAATACTTGAGTGCGATAATGCCGATTCTCGCCATTTCCAACTTCATGGACGCCATCCAGGGCGTCCTTTCAGGGACCGCGAGAGGATGTGGATGGCAGAAGATAGGGGCATGGGTGAATCTTGGAGCTTATTACTTACTTGGGTTGCCTTCTGCCATTACCTTCACTTTTGTGCTTCATTTTGGAGGCAAGGCAAGAAAAGCAAAGGAAAGAATGATAGGAATGTCGACACCGGCGACGGCGACGGCGACGTCGGCGATATTTGTGGTGCTTTCAGGTTTGTGTTTTGTCGTTTTGAATTCCGATAATTTGATGGGGCGATGGCTACCAATTGTGGGGTTGTTGGCGGTCGCCGGAGTGGCGGTGGTGGCGGCCAGAGCCACAATGGTGGCGTGGATCACGGTGTTGGTGCTATTGACGTTCGCCGGAAACCGACGGCGGGTTCTGGTCAAACAGGGAAGAAAGATCACCGCCGATGTAGCCATGTACTTGGCCGCCGTGATGGTTAAAGAAAGAGGGCTCATTGCTGTTGCTTTCGCCGCCGTCTTCAGTTTCGTCGCCGTCGTTCGTTCGACGGAGATCGATCTACTTTCTTTCTCTGTTTAA 1656 46.14 MDENGSRKLHNLEAHLLSESQKDLKIRFNGEKWEEVITEVKKQMGLAGPLVLVSFLQYSLQLISIMFIGHLGELQLSGASMAFSFAGVTGFSLLLGMGSALETLCGQAYGGKQYEMLGIHMQRAMVVLSLICIPIALLWASIEQILTILKQDPLISEQAGIYGKWLIPSIIPYGLLQCQFRFLQTQHLTSPLLLSTAASSSIHLLVCWGLVFGFGFGIKGAAFSTAITYWINVFILAFYIKFSPHCQKTWTGFSIHGIKNLISFLALAVPSSLMVCLSTSSLVFRIAYGFGSAVSTRVSNELGAGKAMAAKVAVKVVVVLGLAEGIGLGILLISLRNVWGFLFTNELQVVEYLSAIMPILAISNFMDAIQGVLSGTARGCGWQKIGAWVNLGAYYLLGLPSAITFTFVLHFGGKARKAKERMIGMSTPATATATSAIFVVLSGLCFVVLNSDNLMGRWLPIVGLLAVAGVAVVAARATMVAWITVLVLLTFAGNRRRVLVKQGRKITADVAMYLAAVMVKERGLIAVAFAAVFSFVAVVRSTEIDLLSFSV 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30585642 30594988 + ClCG06G017400.2 Cla06g01700 275892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01700 551 PANTHER PROTEIN DETOXIFICATION 29 416 - -
Cla06g01700 551 CDD MATE_eukaryotic 39 414 IPR045069 GO:0042910|GO:1990961
Cla06g01700 551 Pfam MatE 273 402 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla06g01700 551 Pfam MatE 49 208 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla06g01700 551 PANTHER MULTIDRUG RESISTANCE PROTEIN 29 416 - -
Cla06g01700 551 TIGRFAM matE: MATE efflux family protein 49 280 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01700 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101222547 642.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01731 Cla-Chr2:32187291 Cla06g01700 Cla-Chr6:30585642 1.03E-06 dispersed
Cla06g01700 Cla-Chr6:30585642 Cla11g01219 Cla-Chr11:25470293 6.49E-88 dispersed
Cla07g00267 Cla-Chr7:2962448 Cla06g01700 Cla-Chr6:30585642 5.56E-08 dispersed
Cla06g01700 Cla-Chr6:30585642 Cla06g01437 Cla-Chr6:27936273 9.27E-135 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g821 . . . . . Bpe13g00264 . . . . . . . . . . . Bhi02g00602 . . . . . . Cla06g01700 Cam06g1888 Cec06g1937 Cco06g1941 Clacu06g1844 Cmu06g1785 Cre06g2600 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00103 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01700 Cla_Chr06 FPKM 14.309116 15.174445 19.794949 19.43874 9.466658 8.747038 11.168109 19.830591 20.064901 21.339058