Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01701 ATGGAAGCTGGGAGTAGATTCTACTCTGCTACGGATGAGTTCAGATTGGAAGGCAAATGGTTGGTTGACCCCAGGCATCTTTTCGTTGGACCTAGAATTGGAGAGGGAGCTCATGCCAAAGTTTACGAGGGCAAATATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGAGAAACAGCTGATGAGGTTGCAAAGAAAGAGGCTCGGTTTGCTCGAGAAGTTGCAATGCTGTCTAAAGTACAACATAAGAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACCGAGCTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAACATGCGCCCACGGTGCTTGGACACACGCGTAGCAGTTGGTTTTGCGCTTGATATTGCTCGTGCTATGGAATGTCTTCACTCACATGGCATCATACACCGTGATCTGAAACCTGGTAGTCTTTTTGATCCACCTCATAATCCTATAAATCTTCATTCCATTCCAAATGCTCTGTTACCCAACCCTTTTAATGAATTAGTGCATTGTAATAATTTGGTTATTATTTCAATTTCAAAGAACCTTCTGTTGACTGCAGATCACAAAACAGTTAAATTAGCTGATTTTGGTTTGGCAAGAGAAGAGTCGTTGACGGAGATGATGACTGCAGAGACGGGGACATACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTGACACTAAGGCAAGGGGAGAAGAAACATTACAACCATAAAGTGGATGCCTATAGCTTTGCTATTGTGTTATGGGAACTGCTACACAACAAGTTGCCATTTGAAGGCATGTCAAATCTTCAAGCAGCATATGCAGCTGCTTTTAAGATTCTTCATATGCACTCTTCTTACCATGTCATCTCTCTGATTGATGGAATTTTGAATGTTAGGCCTAGCGCAGAGAATATTCCAGAGGAACTGGCTATCATTCTAACATCATGCTGGCAGGAGGATGCAAATGCTCGTCCAAATTTCACCCAAATAATCCAAATGTTACTTAATTACCTTTATACCATTTCACCCCCCGAGCCGATGATACCTTCCCGAATTTTCTCTTCTGAGAACACTGTTTTTCCTCCTGAGTCTCCCGGAACAAGCTCACTAATGGCAGTCCGTGACGATTCAGGGGACACTCCAAAAGCTAAAATGGAAAATAATCCCAGAGGTTGTTTCTTCTGCTCCAATGACTGTTACTAA 1236 42.64 MEAGSRFYSATDEFRLEGKWLVDPRHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETADEVAKKEARFAREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPGSLFDPPHNPINLHSIPNALLPNPFNELVHCNNLVIISISKNLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKILHMHSSYHVISLIDGILNVRPSAENIPEELAIILTSCWQEDANARPNFTQIIQMLLNYLYTISPPEPMIPSRIFSSENTVFPPESPGTSSLMAVRDDSGDTPKAKMENNPRGCFFCSNDCY 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30598998 30602464 + ClCG06G017420.2 Cla06g01701 275893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01701 411 SUPERFAMILY Protein kinase-like (PK-like) 20 376 IPR011009 -
Cla06g01701 411 Pfam Protein tyrosine and serine/threonine kinase 31 152 IPR001245 GO:0004672|GO:0006468
Cla06g01701 411 PANTHER SERINE-THREONINE PROTEIN KINASE 1 157 - -
Cla06g01701 411 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524
Cla06g01701 411 ProSiteProfiles Protein kinase domain profile. 27 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01701 411 Gene3D Transferase(Phosphotransferase) domain 1 107 352 - -
Cla06g01701 411 Pfam Protein kinase domain 195 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01701 411 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
Cla06g01701 411 PANTHER SERINE-THREONINE PROTEIN KINASE 195 386 - -
Cla06g01701 411 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 1 157 - -
Cla06g01701 411 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 195 386 - -
Cla06g01701 411 MobiDBLite consensus disorder prediction 373 393 - -
Cla06g01701 411 PIRSF TyrPK_CSF1-R 192 357 - -
Cla06g01701 411 PIRSF TyrPK_CSF1-R 117 154 - -
Cla06g01701 411 PIRSF TyrPK_CSF1-R 15 128 - -
Cla06g01701 411 CDD STKc_MAP3K-like 33 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01701 Cla-Chr6:30598998 Cla11g01089 Cla-Chr11:22239628 1.62E-62 dispersed
Cla01g01888 Cla-Chr1:33686062 Cla06g01701 Cla-Chr6:30598998 1.95E-85 transposed
Cla10g02141 Cla-Chr10:37063622 Cla06g01701 Cla-Chr6:30598998 3.68E-127 transposed
Cla10g01313 Cla-Chr10:28072770 Cla06g01701 Cla-Chr6:30598998 0 wgd
Cla06g01701 Cla-Chr6:30598998 Cla09g01885 Cla-Chr9:36549776 2.93E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80664 PF00069 Pkinase 8.80E-22 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01701 - - csv:101223021 670.618