Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01706 ATGGAAGCTCTGGCGCTTCCTTCCCTGAATTCACTCCCCATTTCTTGTTCTAATTTGAAGAATCGAGGTTTTGCCAACTGCCCCAGAAGATTGCATCACTGTAAATTTTACCAACAATCCAACTTCAAGTTCAATGGTACCCACCGCTCTCATTTCAATGTTATCAAAATGCAAAGTGATAGTGATGACTATGAGCTGAAGCAAATGAGGGACATGGCTGCAGCTAAAAAGAGATGGGACTCTCTGATCCGAGAAGGCAAAGTGAAAGTTCTGATGCCAAGGGAAGCTGGTTATGCCATTCAGCTCTCTGATAAGACATTGCTTGATGTGCGTCCTTCTACAGAACACAAAAAGGCATGGGTTAAAGGCTCAACATGGATCCCTATCTTTGATGTTGATGACAAACTTGATCCTGGAACTCTTTCTCGAAAAGTCACAAGCTTCATGATGGTTAGTCCCTTACATCGATCTTATGTGTGCCTAGGGGGTTGGTGGAGTGGGGTGCCTACAGTATCCTACAACAGCCGATTCTTGACAGAAGTTCAAGAGAAGTTTCCAAAAGATGCTGACCTTATTCTTGCATGCCAAAAGGGATTGAGGTCCCTAGCTGCATGCGAACTCCTCTACAATGCTGGTTATAGAAACCTTTTCTGGATTCAAGGCGGTCTAGATGCTGCTGAAGAAGAGGATCTTGTCAGAGAAGGTCCTCAGCCCTTAAAATTCGCTGGGATTGGTGGGCTTTCAGAATTCCTTGGTTGGACAGATCAACAAAGGGTGGCTGGTGCAAAAGAAGGTTGGGGTTATCGCTTGGTTTACTCTGCTCGTCTGGTTGCAGTCTTTCTTGCTGCTGATGTCCTGTTTATCGGCGCTCAGCAATTGGGTCATTATATTCAGGAATTACGGTCTCACTAA 912 44.96 MEALALPSLNSLPISCSNLKNRGFANCPRRLHHCKFYQQSNFKFNGTHRSHFNVIKMQSDSDDYELKQMRDMAAAKKRWDSLIREGKVKVLMPREAGYAIQLSDKTLLDVRPSTEHKKAWVKGSTWIPIFDVDDKLDPGTLSRKVTSFMMVSPLHRSYVCLGGWWSGVPTVSYNSRFLTEVQEKFPKDADLILACQKGLRSLAACELLYNAGYRNLFWIQGGLDAAEEEDLVREGPQPLKFAGIGGLSEFLGWTDQQRVAGAKEGWGYRLVYSARLVAVFLAADVLFIGAQQLGHYIQELRSH 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30633629 30637409 - ClCG06G017470.2 Cla06g01706 275898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01706 303 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 87 226 IPR036873 -
Cla06g01706 303 SMART rhod_4 91 232 IPR001763 -
Cla06g01706 303 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 302 IPR044664 -
Cla06g01706 303 ProSiteProfiles Rhodanese domain profile. 101 235 IPR001763 -
Cla06g01706 303 CDD RHOD 106 225 - -
Cla06g01706 303 Pfam Rhodanese-like domain 103 225 IPR001763 -
Cla06g01706 303 Gene3D - 88 267 IPR036873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01706 - - - csv:101221836 526.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00101 Cla-Chr4:3064315 Cla06g01706 Cla-Chr6:30633629 1.84E-14 dispersed
Cla05g00987 Cla-Chr5:9926625 Cla06g01706 Cla-Chr6:30633629 2.62E-06 dispersed
Cla06g01706 Cla-Chr6:30633629 Cla10g02091 Cla-Chr10:36612920 2.73E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g01054 . 1255 1570 Sulfurtransferasese/Rhodanese AT1G79230 75.6 5.1e-146 514.2
Cla05g01054 . 1255 1519 Sulfurtransferasese/Rhodanese AT1G16460 73.6 2.1e-113 405.6
Cla04g01122 . 97 373 Sulfurtransferasese/Rhodanese AT5G23060 60.5 2.3e-82 302.8
Cla05g00105 . 675 1135 Sulfurtransferasese/Rhodanese AT4G01050 51.7 4.2e-118 422.2
Cla01g01100 . 6 657 Sulfurtransferasese/Rhodanese AT1G09280 52.7 8.6e-184 640.6
Cla07g00499 . 84 436 Sulfurtransferasese/Rhodanese AT2G40760 75.6 1.6e-156 549.7
Cla10g01457 . 570 1023 Sulfurtransferasese/Rhodanese AT1G17850 52.3 3.4e-132 468.8
Cla04g00101 . 30 235 Sulfurtransferasese/Rhodanese AT2G42220 73.8 9.7e-86 313.5
Cla10g02091 . 488 668 Sulfurtransferasese/Rhodanese AT3G08920 63.0 1.9e-64 242.7
Cla06g01706 . 1 303 Sulfurtransferasese/Rhodanese AT4G24750 64.4 1.0e-108 390.2
Cla02g02209 . 67 271 Sulfurtransferasese/Rhodanese AT5G19370 63.8 3.0e-71 265.8
Cla10g00489 . 113 442 Sulfurtransferasese/Rhodanese AT5G55130 64.9 3.2e-120 428.7
Cla05g00987 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.0 3.2e-78 288.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01706 Cla_Chr06 FPKM 7.17176 6.136065 6.022483 5.519845 7.669448 6.043255 7.234776 6.433074 7.294468 7.035329