Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01707 ATGGCAATCCGAATTATTTTGGCTGCGCAGGAATCTTCCTGGAAATTAACCATCGCCAAGAAATGTGGATGTAACTTTAATGCAGCTCTTGGGTTCGACTTTGTTTGTATCGTTTCTTCAGAATGTACTCGCTCTCGAGTGAAATTTTTAACCCTTTTTAGTTCTTGTGAAGTGATGGGTGGGAAAAGTTCTAAGCATGGAAGTTCAAGGCGGATTTCGTCTAGTCGGTCGAACTCGCAGCAGCGGAGTCATTACGGTTATCCACAGTCACCATATGCTCAATCAAGAAGCACGCCGCAGTATCGGTATGCACCTTCAACTCCTAGCTATGGTGGAACTCAAGCCCCTGAGACAAGAAAGAGGCTGGAGAGGAAGTATTCAAGGATAGATGATAACTATAATAGTCTAGAGCAGGTTACTGAGGCATTGGCTCGTGCTGGCCTGGAGTCCTCGAATCTTATCGTCGGTATAGATTTCACGAAGAGCAATGAGTGGACAGGTGCAAGATCATTTAACCGTAGAAGTTTGCATCACATTGGAGATGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGACAAACATTATCTTCCTTCGACGAGGATAATTTGATTCCTTGCTTTGGTTTTGGAGATGCATCAACTCATGACCAAGAGGTTTTCAGCTTTTATCCCGACGAGCGATTTTGTAATGGATTTGAAGAAGTGTTGGGTAGATATAGGGAACTGGTGCCTCATCTTCGACTTGCAGGACCAACATCATTTGCCCCGATCATCGAAATGGCTATCACAATTGTCGAGCAAAGTGGCGGCCAATACCATGTATTGGTAATAATAGCTGATGGTCAGGTTACAAGAAGTGTCGATACTGAGCGTGGACAGTTTAGCCCACAGGAAAAGAAAACCATTGAAGCAATTGTGAAAGCTAGTGAATACCCCTTGTCGATTATACTAGTTGGAGTAGGAGATGGACCTTGGGACATGATGAGGGAATTTGATGACAACATCCCAGCTCGAGCATTTGATAACTTCCAATTTGTAAATTTCACAAATATAATGTTGAAGAATATGGATCGATCCAGAAAGGAAACGGAATTTGCTCTTGCAGCACTCATGGAAATACCCTCCCAGTATAAAGCTACACTGGAGCTTGATATTTTGGGTGCCAGTAGAGGGAAGGCAATCGACCGGATTCCTCTTCCCCCTCCTCGTTATGGACCTAGCACCCAGAAAACCTCAAACTCAAGCAGTTCTCGCCCAATGGCGCCCTCATTTGGTGGAGCTGCTCCTGCCCGAACTGCACCTCCTCTTAGTTCGGTTTCTGATGCTCATGCTTGTCCAATTTGCATCTCCAATGCAAAGGATATGGCTTTTGGTTGCGGACATCAGACATGCTGTGAATGTGGACAGGATCTTCAGCAGTGCCCCATATGCCGCAGCTTCATTGACACTAGGATAAAGCTTTATTAG 1473 44.6 MAIRIILAAQESSWKLTIAKKCGCNFNAALGFDFVCIVSSECTRSRVKFLTLFSSCEVMGGKSSKHGSSRRISSSRSNSQQRSHYGYPQSPYAQSRSTPQYRYAPSTPSYGGTQAPETRKRLERKYSRIDDNYNSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVLGRYRELVPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSPQEKKTIEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTNIMLKNMDRSRKETEFALAALMEIPSQYKATLELDILGASRGKAIDRIPLPPPRYGPSTQKTSNSSSSRPMAPSFGGAAPARTAPPLSSVSDAHACPICISNAKDMAFGCGHQTCCECGQDLQQCPICRSFIDTRIKLY 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30642404 30646076 + ClCG06G017480.2 Cla06g01707 275899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01707 490 PANTHER RING-FINGER PROTEIN 59 490 - -
Cla06g01707 490 MobiDBLite consensus disorder prediction 408 423 - -
Cla06g01707 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 490 IPR013083 -
Cla06g01707 490 MobiDBLite consensus disorder prediction 59 114 - -
Cla06g01707 490 Pfam Copine 175 388 IPR010734 -
Cla06g01707 490 MobiDBLite consensus disorder prediction 59 119 - -
Cla06g01707 490 Coils Coil 119 139 - -
Cla06g01707 490 CDD RING-HC_RGLG_plant 447 490 IPR045317 GO:0061630|GO:0070534
Cla06g01707 490 SUPERFAMILY RING/U-box 444 485 - -
Cla06g01707 490 MobiDBLite consensus disorder prediction 396 434 - -
Cla06g01707 490 PANTHER COPINE FAMILY PROTEIN 1 59 490 - -
Cla06g01707 490 Pfam Zinc finger, C3HC4 type (RING finger) 445 484 - -
Cla06g01707 490 SUPERFAMILY vWA-like 152 334 IPR036465 -
Cla06g01707 490 SMART VWA_4 150 353 IPR002035 -
Cla06g01707 490 ProSiteProfiles Zinc finger RING-type profile. 447 480 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01707 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101221610 788.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02057 Cla-Chr1:35058962 Cla06g01707 Cla-Chr6:30642404 3.10E-142 dispersed
Cla06g01707 Cla-Chr6:30642404 Cla05g00001 Cla-Chr5:34558 1.30E-21 dispersed
Cla01g01491 Cla-Chr1:29437857 Cla06g01707 Cla-Chr6:30642404 8.46E-153 transposed
Cla10g01307 Cla-Chr10:28015170 Cla06g01707 Cla-Chr6:30642404 0 wgd
Cla05g02613 Cla-Chr5:37339391 Cla06g01707 Cla-Chr6:30642404 0 wgd
Cla06g01707 Cla-Chr6:30642404 Cla09g01893 Cla-Chr9:36623816 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01707 Cla_Chr06 FPKM 4.169343 2.465953 2.555731 1.594446 20.794086 20.163504 19.781498 2.28613 3.370473 2.783705