Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01712 ATGCCTTCACCTTCCTCTAAACTCCTTCCACTCTTGGCTTTTCTCTCCGTTCTTCTCCGCGTCCATGCCCGATTGAACCTTGATCCTTCAGATCTCAGAGCCTTTTCTATCATAAAAAATGACTTGGGCATTGACGGTCAACTCTCCCCCTCCCCATGCCACAACGCCGGTGTGTTCTGCGAGCGGCGGCTCTCCGACAACGGCACTTATGTTTTGAGGATCACCAGGCTCATTTTCAACTCCAAAGGTCTCACTGGTTCTCTTTCTCCGGCTATCGGGCGGCTCACGGAGTTGAAAGAGCTTACGGTTTCTAACAATCACCTCGTTGACCAAGTACCTCCCCAAATCGTTGACTGCCGGAAACTGGAAATTCTCGATCTCCAAAGCAACCAATTTTCTGGAAAAGTTCCGTCTGGATTGTCCTCACTGATTCGCCTTCGAGTCATCGCTCTTTCGTCCAATAAATTCTCGGGGAGTTTGGATTTCTTGAAGCATTTCCCCAACTTGGAAAGTCTCTCCATAGCCAACAATTACTTCACAGGGAAGATCCCAGCTTCAATTCGTTCATTTCGCAATCTTCGAGTCTTCAACTTCTCCGGAAATCGCCTTCTCGAAAGTTCAGCCCCTATCGTGAAGGGTGTTGAGTTCTATTCGGCTACAGAAGTTCCCAAGCGTTATAAGTTAGCTGAGAATTCCAGTACGAAAGGCACGCACAGGGCCGCCGCTACAGCGCCAACTTCGAGTGCTCAAGCTCCATCTCCCGTGCCACCCCCTACTCATAAGCATCGGAAGAATGAAGCAAAGAAGGTAATTTCTTGGATACTTGGGTTCCTCGCTGGAGCAATTGCTGGGAGTTTGTCAGGGTTTATCTTTTCTCTACTGTTTAAACTCGTCATAGCAGCTATAAAAGGTGGAAGCAAGAATTCAGGTCCCTCAATCTTTGCTCCTAAGTTGATAAAACGAGATGATTTGGCTTTTCTAGAGAAAGACGATGCGCTTGCATCGCTGGAGCTGATTGGAAAAGGTGGATGTGGAGAAGTTTACAAAGCTGAATTACCAGAAAAAAGTGGGAAAATGTTTGCAATAAAGAAGATAAGTCAACCCCCAAAGGATGCGGCCGAGTTAGCTGACGAGGACAGCAAGCTTATGAGCAAGAAAATGCGTCAGATCAAGTCAGAGATCAAAACTGTGGGCGAAATCCGGCATCGGAATCTTCTTCCTCTTGTGGCCCATGTCCCTCGTCCTGATTGTCACTACCTTGTGTATGAATTGATGAAGAATGGCAGCTTGCAAGATATGTTGAATCAGGTTTCAGCAGGAGTGAAAGAACTAGATTGGCTTACTCGGCATAAAATTGCTCTTGGAGTTGCATCTGGGCTTGAGTATCTTCACATGAATCATACCCCACGTATTATTCACAGGGATCTGAAGCCTGCAAATGTTTTGCTTGATGACGACATGGAAGCTCGAATTGCTGATTTCGGGCTGGCAAAAGCAATGCCAGATGCCCAAACTCACATAACAGCTTCAAATGTTGCAGGTACCGTAGGATACATCGCACCAGAGTATCATCAGACAATGAAGTTCACTGATAAATGTGATATATACGGCTTTGGGGTTCTGCTAGGTGTCTTGGTGATCGGGAAACTCCCATCTGATCAGTTTTTCCAAAACACGGATGAGATGAGTTTGGTTAAGTGGATGAAGAATGTTATGACTTCGGATAATCCTAGGGGAGCCATCGATCCAAAGCTCCTGGGAAATGGCTGGGAGGAGCAAATGCTTTTGGCCCTCAAAATTGCCTGCTTTTGCACTATGGATAATCCAAAAGAGAGGCCTAATAGCAAGGATGTCAGATGCATGCTGTCCCAAATCAAGCACGATGTACCTGAAACTCCCTCTCAAAATGTCTAA 1914 46.24 MPSPSSKLLPLLAFLSVLLRVHARLNLDPSDLRAFSIIKNDLGIDGQLSPSPCHNAGVFCERRLSDNGTYVLRITRLIFNSKGLTGSLSPAIGRLTELKELTVSNNHLVDQVPPQIVDCRKLEILDLQSNQFSGKVPSGLSSLIRLRVIALSSNKFSGSLDFLKHFPNLESLSIANNYFTGKIPASIRSFRNLRVFNFSGNRLLESSAPIVKGVEFYSATEVPKRYKLAENSSTKGTHRAAATAPTSSAQAPSPVPPPTHKHRKNEAKKVISWILGFLAGAIAGSLSGFIFSLLFKLVIAAIKGGSKNSGPSIFAPKLIKRDDLAFLEKDDALASLELIGKGGCGEVYKAELPEKSGKMFAIKKISQPPKDAAELADEDSKLMSKKMRQIKSEIKTVGEIRHRNLLPLVAHVPRPDCHYLVYELMKNGSLQDMLNQVSAGVKELDWLTRHKIALGVASGLEYLHMNHTPRIIHRDLKPANVLLDDDMEARIADFGLAKAMPDAQTHITASNVAGTVGYIAPEYHQTMKFTDKCDIYGFGVLLGVLVIGKLPSDQFFQNTDEMSLVKWMKNVMTSDNPRGAIDPKLLGNGWEEQMLLALKIACFCTMDNPKERPNSKDVRCMLSQIKHDVPETPSQNV 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30677277 30679190 + ClCG06G017540.1 Cla06g01712 275904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01712 637 SUPERFAMILY L domain-like 48 206 - -
Cla06g01712 637 Gene3D Transferase(Phosphotransferase) domain 1 425 635 - -
Cla06g01712 637 Gene3D Ribonuclease Inhibitor 162 222 IPR032675 -
Cla06g01712 637 SMART serkin_6 333 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01712 637 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN-RELATED 8 627 - -
Cla06g01712 637 SUPERFAMILY Protein kinase-like (PK-like) 333 626 IPR011009 -
Cla06g01712 637 MobiDBLite consensus disorder prediction 233 249 - -
Cla06g01712 637 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 627 - -
Cla06g01712 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Cla06g01712 637 Gene3D Ribonuclease Inhibitor 17 161 IPR032675 -
Cla06g01712 637 Pfam Protein kinase domain 336 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01712 637 Gene3D Phosphorylase Kinase; domain 1 326 424 - -
Cla06g01712 637 MobiDBLite consensus disorder prediction 230 264 - -
Cla06g01712 637 Pfam Leucine Rich Repeat 168 189 IPR001611 GO:0005515
Cla06g01712 637 ProSiteProfiles Protein kinase domain profile. 333 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01712 Cla-Chr6:30677277 Cla07g00129 Cla-Chr7:1471542 3.53E-10 dispersed
Cla07g01129 Cla-Chr7:28178597 Cla06g01712 Cla-Chr6:30677277 3.16E-56 dispersed
Cla06g01712 Cla-Chr6:30677277 Cla08g01193 Cla-Chr8:24848146 3.54E-06 transposed
Cla06g01712 Cla-Chr6:30677277 Cla11g01456 Cla-Chr11:28223851 8.41E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80665 PF00069 Pkinase 1.20E-42 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01712 - - csv:101220500 1118.61