Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01714 ATGGCAATGCCACACGAAACGACGCCGCTTAGGGTAGCCACTCTCACAACCTCAAACACCACTTGCCTGGCCGCCCATAACGGCCTCCTCTACTCCGGCTCCGCCAACCAAATCGCCGTCTTCGATTTAACCAACGACTTCACGCAAATCGACACTCTTCGCATAAACGACGCCGCTTCGGGGTCCGTTAAGTCCATCGCTTTTGGGCCTTGGAAAATCTTCACGGCCCATCAGGATTGTAAGATCCGCGTATGGAAAATCACGCGATCGGAACCGCCACGTCATCGTCTTCTGGCAACTCTCCCCACCGTTAAAGACCGGCTTTACCGGTTTATTTCGCCGGGGAATTACGTACGTGTACGGCGCCACCACAAGCGGCTGTGGATTGAGCATTGGGATGCGGTTTCTGGGGTGGTGGTGAATGGAGGGTTTGTGTACTCTGTTTCATGGGATCGGAGTTTTAAGGTTTGGAGTGCTTCGGATCATAAGTGTTTGTTGTCCGTCAAAGCTCATGACGATGCGGTCAACGCGGTTGCCGTAGGTCAGAACGGCGTCGTTTATACCGGCTCTGCGGATGGGGTTATTGGAGTTTGGGAGATTAGGGAGGGGAAGAAGAAGAAGTATACGTTGGTTGGGACTTTGGACAACCACAAATCCACGGTAAATGCGATCGCGTTGAACGAGGGAGGTTGGGCAATGTTTTCGGGGAGCAGTGACCGTTCAATAATGGTGTGGAAGAAAGAAGAGGTCGGAAAGCAAATTGCGTTTGTTGAGGCTTTATCGGGTCATCAAGGGGCTGTTTTGTCCTTGTATACTCTTCGAGATTTCTTAGTCAGTGGCTCTGAAGATCGAACGCTCAGGATTTGGAGAGGCAACATCACTAACGGCTACCATTGTACGGCTGTAATGGATGGACACAGGTCGCCGGTGAAGTCTTTGGTTGCCGTCGGAGCCGGTGAACGAAGTTTGATGATCTGTAGTGCCAGTTTGGATGGAGAAATACAAGTTTGGAGTTTCGTGTTTTGA 1026 51.27 MAMPHETTPLRVATLTTSNTTCLAAHNGLLYSGSANQIAVFDLTNDFTQIDTLRINDAASGSVKSIAFGPWKIFTAHQDCKIRVWKITRSEPPRHRLLATLPTVKDRLYRFISPGNYVRVRRHHKRLWIEHWDAVSGVVVNGGFVYSVSWDRSFKVWSASDHKCLLSVKAHDDAVNAVAVGQNGVVYTGSADGVIGVWEIREGKKKKYTLVGTLDNHKSTVNAIALNEGGWAMFSGSSDRSIMVWKKEEVGKQIAFVEALSGHQGAVLSLYTLRDFLVSGSEDRTLRIWRGNITNGYHCTAVMDGHRSPVKSLVAVGAGERSLMICSASLDGEIQVWSFVF 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30682872 30684807 - ClCG06G017555.1 Cla06g01714 275906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01714 341 SMART WD40_4 253 290 IPR001680 GO:0005515
Cla06g01714 341 SMART WD40_4 296 338 IPR001680 GO:0005515
Cla06g01714 341 SMART WD40_4 207 246 IPR001680 GO:0005515
Cla06g01714 341 SMART WD40_4 8 42 IPR001680 GO:0005515
Cla06g01714 341 SMART WD40_4 161 199 IPR001680 GO:0005515
Cla06g01714 341 SMART WD40_4 114 158 IPR001680 GO:0005515
Cla06g01714 341 SMART WD40_4 46 86 IPR001680 GO:0005515
Cla06g01714 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 204 - -
Cla06g01714 341 SUPERFAMILY WD40 repeat-like 16 338 IPR036322 GO:0005515
Cla06g01714 341 Pfam WD domain, G-beta repeat 260 289 IPR001680 GO:0005515
Cla06g01714 341 Pfam WD domain, G-beta repeat 163 198 IPR001680 GO:0005515
Cla06g01714 341 Pfam WD domain, G-beta repeat 210 246 IPR001680 GO:0005515
Cla06g01714 341 ProSitePatterns Trp-Asp (WD) repeats signature. 186 200 IPR019775 -
Cla06g01714 341 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Cla06g01714 341 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Cla06g01714 341 PRINTS G protein beta WD-40 repeat signature 186 200 IPR020472 -
Cla06g01714 341 Gene3D - 117 340 IPR015943 GO:0005515
Cla06g01714 341 Gene3D - 4 111 IPR015943 GO:0005515
Cla06g01714 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 289 - -
Cla06g01714 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 246 - -
Cla06g01714 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 208 IPR001680 GO:0005515
Cla06g01714 341 PANTHER F21J9.19 12 339 - -
Cla06g01714 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 246 IPR001680 GO:0005515
Cla06g01714 341 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 339 IPR045182 -
Cla06g01714 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 289 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01714 - - - csv:101204201 580.482
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g01398 Cla06g01714 CCT
Cla01g01398 Cla06g01714 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01714 Cla-Chr6:30682872 Cla08g01527 Cla-Chr8:28026055 1.21E-56 dispersed
Cla03g00685 Cla-Chr3:8316365 Cla06g01714 Cla-Chr6:30682872 1.36E-07 transposed
Cla05g02616 Cla-Chr5:37377138 Cla06g01714 Cla-Chr6:30682872 4.54E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01714 Cla_Chr06 FPKM 3.499611 3.662502 6.971317 8.447521 11.373811 10.440511 13.131704 8.570149 8.589275 10.991511