Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01715 ATGGGTGGGGTTACTTCTTCCATGGCTGCTAAATTCGCTTTCTTCCCTCCTAATCCACCCTCTTACAAACTCCTCACAGACCAACCCACTGGTCTTCTTCTCTTGGACCCTTTTCCCCACCGCGAAAATGTCGATGTCTGGAAGCTTCCGACGCGTAAAGGCAATGAGATTGTCGCTGTTTACATCCGTTACCCTATGGCTACTTCCACGCTTCTTTATTCCCATGGAAATGCCGCCGATGTTGGTCAGATGTATGAGCTCTTCGTTGAACTCAGCATCCATTTGCGCGTTAATCTTCTTGGGTACGATTACTCTGGATACGGGCAGTCCACTGGAAAGCCAAGCGAGCACAATACTTATGCAGATATTGAAGCTGCATACAAGTGTCTTGAGGAGAAGTATGGTGCTAAGCAAGAGGAAATAATCCTTTATGGTCAATCTGTTGGAAGTGGCCCAACTTTGGACCTTGCTGCACGTTTGCCCCGACTGCGAGCAGTTGTCCTGCATAGTCCTATATTGTCAGGATTAAGAGTCATGTATCCAGTCAAACGCACGTATTGGTTTGACATCTATAAGAACATTGATAAAATACCATATGTTAAGTGCCCTGTGCTGGTAATTCATGGAACTTCCGACGACGTTGTTGATTTCTCTCACGGCAAACAGCTCTGGGAATTGTGTCAAGAGAAATATGAACCCTTATGGCTGAAAGGGGGAAACCATTGTGATCTTGAACTCTTCCCAGAATACATTAGGCATCTCAAGAAATTTGTATCCACCGTTGAGAGATCCCCTTCACGAAGGAATGGTTCAAGGAAAAGCACAGACCGAATGGAGCAATCAAGAAGGAGCACGGATTGTTTCGAGGCCCCAAGAAGGAGCACAGACAGGCGAGAGAAGCCTAGGAAAAGCGTAGATAGGCTAGACAAATCAAGACCGCAAGGATACAAGTTTGACAACATCGAGAAGCTAGAGAAACTAAAAATCTCAATTGACCAAGTAGAGAGATCAAGGAGAAGTGTGGAGTACTATGAGAAACCAAGGAGAAGCATCGACCAACAGTTTGAAAAAGCTCGAAAGAGCGTCGATTGGTTGGATAGAATCCGTGCCGGAGGGCGATCGATTATGATCATGTCCCCAAACGAGATAGCAAACGATTCGATTAAGCACGCTCTCAGGGCGCTTCGGCAACGCCATCTGCTTGAAGAAGGTGCGCATGCTCCTGCTTTTCTCGCTCTCTCTCGCCCCATCATAACCCAGAGTTCGGAATGGAAAGAGAAAGCGGAGAAGCTGGAGTTGGAGCTTCAGCAGTGTTATAAGGCTCAATCACGATTGTCTGAGCAACTTGTGGTTGAAGTTGCTGAGGTTCGAACTTCTAAATCTTTGATTGGGGAGAAAGATGCGTTAATTGATAATTTGGAGCAGGAATTAAGTCGAACCAGGGAAGAATGCTCGCAGCTGAAGGCAGACTTAGAGACTAAAATTAAAGCTCTGGTACTGGCTATATCTGAGAATCAAGAAATTAAAACACAGCTTGAAGCAATGACAGTTAAAGCTAAGAATGCAGAGGCTGAAAACAAGATGTTGGTTGATCGGTGGATGCTTCAAAAGATGCAGGACGCAGAACGCCTCAATGAGGCAAATGCACTCTATGAAGATATGATTGACCGACTCAAGGCTAGTGGTTTAGAGAAACTTGCTCAGCAACAAGTTGATGGCGTGGTTCGCCAAAGTGAAGAGGGTGCTGAATTCTTTGTGGAATCCACTGTACCCTCAGTGTGCAAGCATAGGATCCGTGGCCATGAAGGGGGGTGTGGTACTATATTGTTTGAACATAACTCAGGAAAGTTGATCAGTGGGGGGCAGGACCGTACAGTCAAATTGTGGGATACAAATACTGGATCATTAAGTTCCACTCTACATGGGTGCCTTGGTTCTGTTCTTGATCTTGCAATTACCCACGATAATAGATCTGTCATTGCAGCAAGCAGTTCAAACAACTTATATGCATGGGACATCAGTTCTGGAAGGGTGCGCCATACATTGACTGGTCACTCAGACAAAGTATGTGCTGTAGATGTAAGCAAAATTTCTAGCCGCTATGTTGTGAGTGCTGCATATGATCGCACCATTAAAATTTGGGATCTACAGAAGGGTTACTGCACCAAGACCTTCATTTTTGCCAGCAATTGCAATGCAGTTTGTTTCAGCATGGATGGACAGACCATTTGTTCTGGCCATGTGGATGGAAATCTTCGGTTGTGGGATATTCAAACAGGAAAATTGATTAGTGAAGTTGCTGGACACTCCCTTGCTGTTACATCTCTTGCTTTGTCGCGTAATGGCAATACAATATTGACTAGTGGGAGAGATAACTTGCATAATTTATTTGATATTCGATCTTTGGAAGTCTGTGGGACATTACGGGCGTCTGGGAATAGAGTAGCTTCCAATTGGAGCCGTTCTTGCATCAGTCCAGACGACAACTATGTTGCTGCTGGTTCTGCGGATGGGTCAGTCCATGTGTGGTCAATATCAAAACATGATATTGTGAGCACTCTGAAAGAGCACGCTGCATCTGTCCTGTGTTGTTCATGGAGTGGGCTTGGAAAACCCCTTGCATCTGCGGACAGAAATGGAATAATATTTACATGGAACTGA 2661 45.13 MGGVTSSMAAKFAFFPPNPPSYKLLTDQPTGLLLLDPFPHRENVDVWKLPTRKGNEIVAVYIRYPMATSTLLYSHGNAADVGQMYELFVELSIHLRVNLLGYDYSGYGQSTGKPSEHNTYADIEAAYKCLEEKYGAKQEEIILYGQSVGSGPTLDLAARLPRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPYVKCPVLVIHGTSDDVVDFSHGKQLWELCQEKYEPLWLKGGNHCDLELFPEYIRHLKKFVSTVERSPSRRNGSRKSTDRMEQSRRSTDCFEAPRRSTDRREKPRKSVDRLDKSRPQGYKFDNIEKLEKLKISIDQVERSRRSVEYYEKPRRSIDQQFEKARKSVDWLDRIRAGGRSIMIMSPNEIANDSIKHALRALRQRHLLEEGAHAPAFLALSRPIITQSSEWKEKAEKLELELQQCYKAQSRLSEQLVVEVAEVRTSKSLIGEKDALIDNLEQELSRTREECSQLKADLETKIKALVLAISENQEIKTQLEAMTVKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAQQQVDGVVRQSEEGAEFFVESTVPSVCKHRIRGHEGGCGTILFEHNSGKLISGGQDRTVKLWDTNTGSLSSTLHGCLGSVLDLAITHDNRSVIAASSSNNLYAWDISSGRVRHTLTGHSDKVCAVDVSKISSRYVVSAAYDRTIKIWDLQKGYCTKTFIFASNCNAVCFSMDGQTICSGHVDGNLRLWDIQTGKLISEVAGHSLAVTSLALSRNGNTILTSGRDNLHNLFDIRSLEVCGTLRASGNRVASNWSRSCISPDDNYVAAGSADGSVHVWSISKHDIVSTLKEHAASVLCCSWSGLGKPLASADRNGIIFTWN 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30699833 30706234 + ClCG06G017560.2 Cla06g01715 275907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01715 886 Pfam Autophagy protein 16 (ATG16) 420 545 IPR013923 -
Cla06g01715 886 SUPERFAMILY WD40 repeat-like 590 886 IPR036322 GO:0005515
Cla06g01715 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 682 724 IPR001680 GO:0005515
Cla06g01715 886 SMART WD40_4 633 672 IPR001680 GO:0005515
Cla06g01715 886 SMART WD40_4 591 630 IPR001680 GO:0005515
Cla06g01715 886 SMART WD40_4 801 844 IPR001680 GO:0005515
Cla06g01715 886 SMART WD40_4 718 756 IPR001680 GO:0005515
Cla06g01715 886 SMART WD40_4 759 798 IPR001680 GO:0005515
Cla06g01715 886 SMART WD40_4 847 886 IPR001680 GO:0005515
Cla06g01715 886 SMART WD40_4 675 715 IPR001680 GO:0005515
Cla06g01715 886 MobiDBLite consensus disorder prediction 262 313 - -
Cla06g01715 886 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 1 316 - -
Cla06g01715 886 ProSitePatterns Trp-Asp (WD) repeats signature. 702 716 IPR019775 -
Cla06g01715 886 CDD WD40 594 886 - -
Cla06g01715 886 Gene3D - 729 886 IPR015943 GO:0005515
Cla06g01715 886 PANTHER ALPHA/BETA-HYDROLASE SUPERFAMILY PROTEIN 328 385 - -
Cla06g01715 886 Coils Coil 505 532 - -
Cla06g01715 886 ProSitePatterns Trp-Asp (WD) repeats signature. 743 757 IPR019775 -
Cla06g01715 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 801 IPR001680 GO:0005515
Cla06g01715 886 Gene3D - 454 728 IPR015943 GO:0005515
Cla06g01715 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 682 719 - -
Cla06g01715 886 Pfam Serine aminopeptidase, S33 70 174 IPR022742 -
Cla06g01715 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 733 765 IPR001680 GO:0005515
Cla06g01715 886 PANTHER ALPHA/BETA-HYDROLASE SUPERFAMILY PROTEIN 1 316 - -
Cla06g01715 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 598 635 - -
Cla06g01715 886 Coils Coil 421 448 - -
Cla06g01715 886 Coils Coil 541 561 - -
Cla06g01715 886 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 328 385 - -
Cla06g01715 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 639 IPR001680 GO:0005515
Cla06g01715 886 PRINTS G protein beta WD-40 repeat signature 702 716 IPR020472 -
Cla06g01715 886 PRINTS G protein beta WD-40 repeat signature 743 757 IPR020472 -
Cla06g01715 886 PRINTS G protein beta WD-40 repeat signature 617 631 IPR020472 -
Cla06g01715 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 640 681 IPR001680 GO:0005515
Cla06g01715 886 Pfam WD domain, G-beta repeat 721 756 IPR001680 GO:0005515
Cla06g01715 886 Pfam WD domain, G-beta repeat 678 715 IPR001680 GO:0005515
Cla06g01715 886 Pfam WD domain, G-beta repeat 823 844 IPR001680 GO:0005515
Cla06g01715 886 Pfam WD domain, G-beta repeat 594 630 IPR001680 GO:0005515
Cla06g01715 886 Pfam WD domain, G-beta repeat 761 792 IPR001680 GO:0005515
Cla06g01715 886 Coils Coil 120 140 - -
Cla06g01715 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 854 886 - -
Cla06g01715 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 854 886 IPR001680 GO:0005515
Cla06g01715 886 SUPERFAMILY alpha/beta-Hydrolases 5 260 IPR029058 -
Cla06g01715 886 Coils Coil 463 490 - -
Cla06g01715 886 Gene3D alpha/beta hydrolase 46 259 IPR029058 -
Cla06g01715 886 ProSitePatterns Trp-Asp (WD) repeats signature. 617 631 IPR019775 -
Cla06g01715 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 825 853 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01715 K17890 ATG16L1; autophagy-related protein 16-1 - csv:101219308 957.207
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01715 Cla-Chr6:30699833 Cla11g00471 Cla-Chr11:5381174 2.22E-41 dispersed
Cla11g01323 Cla-Chr11:26720259 Cla06g01715 Cla-Chr6:30699833 9.06E-28 dispersed
Cla01g01541 Cla-Chr1:30046392 Cla06g01715 Cla-Chr6:30699833 1.43E-29 transposed
Cla03g01468 Cla-Chr3:30196945 Cla06g01715 Cla-Chr6:30699833 7.07E-12 transposed
Cla04g01103 Cla-Chr4:26218568 Cla06g01715 Cla-Chr6:30699833 4.31E-14 transposed
Cla05g02273 Cla-Chr5:34378248 Cla06g01715 Cla-Chr6:30699833 2.36E-06 transposed
Cla08g01622 Cla-Chr8:28828803 Cla06g01715 Cla-Chr6:30699833 2.77E-08 transposed
Cla10g00125 Cla-Chr10:1274994 Cla06g01715 Cla-Chr6:30699833 9.10E-22 transposed
Cla10g01324 Cla-Chr10:28186461 Cla06g01715 Cla-Chr6:30699833 6.67E-16 transposed
Cla05g00239 Cla-Chr5:2172090 Cla06g01715 Cla-Chr6:30699833 3.51E-08 transposed
Cla05g01375 Cla-Chr5:18367531 Cla06g01715 Cla-Chr6:30699833 0 wgd
Cla06g01715 Cla-Chr6:30699833 Cla09g01897 Cla-Chr9:36681178 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01715 Cla_Chr06 FPKM 6.017372 2.015395 9.763824 11.351826 19.931753 19.32023 17.564075 12.862218 11.4534 13.036351