Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01722 ATGGGGAAGAAGACGAAGAAACCCGGAAAGGGAAAAGAGAAGACTGAGAAGAAAACGGCCAAAGCCGAGGAAAAGAGAGCTCGCAGGGAGAGCAAGAAGCTCTCTCCTGAGGATGATATTGATGCAATTCTCTTGAGTATACAAAAGGAGGAAGCGAAGAAAAAGGAAGTTCATGTTGAGGAGAATGTCCCTGCGCCATCTCCTCGGTCCAATTGTTCGTTGACTATCAATCCCTTGAAAGAAACAGAGTTGATCCTTTATGGGGGTGAATTTTACAATGGTACCAAGACATATGTCTATGGTGATCTGTATCGGTACGATGTTGAGAAACTAGAGTGGAAAGTAATTTCAAGTCCCAATAGCCCCCCTCCTCGTAGTGCTCATCAAGCTGTTGCTTGGAAAAATTACCTCTATATTTTTGGTGGAGAGTTTACATCTCCTAACCAAGAGAGGTTTCATCACTACAAGGATTTCTGGGTGCTGGACCTGAAAACAAATCAATGGGAACAAATAAATTTGAAAGGTTGTCCTAGTCCACGCTCTGGTCATCGGATGGTCTTGTACAAGCACAAAATTATTGTTTTTGGTGGGTTCTATGACACTTTAAGGGAAGTGAGATACTATAACGACATGTACGTGTTTGATCTGGATCAGTACAAGTGGCAAGAAGTAAAGCCTAGTCCTGGTGCAATGTGGCCTAGTCCTCGAAGTGGTTTCCAATTTTTTGTTCAGCAAGATGAGGTTTTCTTGTATGGTGGCTATTTTAAAGAAATTCAATCTGATAAGAACACTTCTGAAAGAGGAGTTGTGCATGCAGACATGTGGTCCCTTGATCCGAGGACTTGGCAATGGAATAAGGTAAAGAAAGGTGGGATGCCGCCTGGGCCTCGTGCAGGGTTCTCCATGTGTGTTCATAAGAGGCGAGCCTTGCTATTTGGGGGAGTGGTGGACATGGAAGTTGAAGGTGGCGATGCAATGATGAGTCTATTCTTGAATGAACTCTATGCATTTCAAATAGACANNNNNNNNNNGTATCCTCTAGAGTTAAGGAAGGAGAAGTCGACAAAGGCAAAGATTAAAAAAATTTCTGAGCAAAAGAACAATGAGGTTGCGTTTGATGATAATATAAATGAGGAGGTTGTTGACGTTGGTAAAATTGAAAATCCAGTCATGGAAGAAGCATGCAACATGGAAACTGACATTGATGAAATATCTCATCATATATCTTCATCTGTGTCCATTAACAACGGTGGATTGGAAATGAGTTCTGGCAACAAACAACAAGAATCTGGTTCGAACGAAAATGCTGTTTTGCCAGAGGTGATTAAGCCCTGTGGACGTATTAACTCCTGCATGGTTGTTGGAAGAGATACACTGTACATCTATGGGGGTATGATGGAGATTAAAGATCGAGAAATCACCCTTGATGACTTGTATGCTCTCAATCTCAGTAAACTTGATGAATGGAAGTGCATTATACCGGCCACGGAATCTGAATGGGTAGAAGCCTCGGAGGATGAAGATGAGGAAGATGATGAAGATGACAGTGAGAATGATGACAATTCTGAAGGAAGCAATGGAAGTGATGAGGATGATAGTGATGAGGAGGATTTTGAGGCTGGAAATAATGGATCACGAAAAGTAGGAGATGCTGTAGCTTTAATTAAGGGTGAGGGCAGGAATCTCCGTAGGAAAGAGAAGCGGGCGAGGATCCAACAAATCAGAGCTAACCTTGGGCTTTCAGATTCACAAAGAACTCCCATGCCTGGAGAATCTCTAAGGGAGTTCTATAAACGTACAAATCTATATTGGCAAATGGCGGCACATGAGCATACACAACATACTGGAAAGGAACTTCGCAAGGACGGATTCGATCTTGCTGAATCTCGTTACAGGGAGCTTAAACCTATCCTTGATGAGGTAAGTTCTATTTTACTTGCTTCAAAGCCAGAATTGTGGTATTCAGAATGTTCTTATTCTTACTCTTTACTGGTTCCTTTGAATAAGCTTGCCATATTGGAGGCAGAGCAGAAAGCAGAAGAAGCAGAAGCTCCTGAAACTAGTTCAAGAAAAAGAGGCAAGAAGAAAAATAAAATTCGAATCTCCAAAACCCCAATCGGGTCACAGCGGCTCGTAGCCGGGTTCCGCAACTCGCAAATTACCAGAGCAATGAAGAAGAAAGCAACAGCAGGAACCATAATTCTTCTTTCACTTTTACTATCTCTACAAGATGTTGTTCATCTTGCTTTCGCTCTATCTCCTTTAGACAGCAATCAGGACGTGGAGCAATCTGCAACTTCAAGACCTCTTGAGCAAGACAAAGAGCATGTTGATGAAGTTCATTGTTCCAGAGAAAGAAGTAGGACAGCCTGGAATATCATTGAGGAGCATTTGCTGCCGTTTATGGAGAAAGAAAATTATCAGGTTTCAACCAAGTGTAGGCTTCATCCAAACAACGATCTCTTCAGAGATCAGGAACAGCACAAGATTCATCTTGATATAAATCATTGGCAGTGTGGATACTGTCGTAAAAGCTTTCGTGCTGAAAAATTTCTTGATAAGCATTTTGACAACAGACATAACAATCTTCTGAATGTTAGCTACGGGAAGTGCTTGGCTGATTTATGTGGGGCATTACATTGTGACCTAAAGATGGATATCAAGTCACGTAAATCTAAATGCAATCCTGCAGCTGCTGCTAGGAACAAGCATTTATGTGAGAGTCTTGCTGATAGCTGTTTTCCAATTAATGAGGGACCATCAGCAAACCGTCTTCATGAGTTGTTTCTTCACCAATTCTGTGGAGCTCATTCTTGCACTGGGAAACAAAAGCCATTTTCTAGAGGAGCGGCGAGGCAACCCGGCATCTTCTACATGGCATCTTCAATACTGATTTTGATGCTGCTGCCAATTTTCTATGTCATTGTCTACTTACACCGCAGAGAATCGAGGAATGGAATCGAAGTGCTTAGACGAATCTCAAAAGCTGGACGTACATCCAAACCCTTGTAA 3012 42.0 MGKKTKKPGKGKEKTEKKTAKAEEKRARRESKKLSPEDDIDAILLSIQKEEAKKKEVHVEENVPAPSPRSNCSLTINPLKETELILYGGEFYNGTKTYVYGDLYRYDVEKLEWKVISSPNSPPPRSAHQAVAWKNYLYIFGGEFTSPNQERFHHYKDFWVLDLKTNQWEQINLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDMYVFDLDQYKWQEVKPSPGAMWPSPRSGFQFFVQQDEVFLYGGYFKEIQSDKNTSERGVVHADMWSLDPRTWQWNKVKKGGMPPGPRAGFSMCVHKRRALLFGGVVDMEVEGGDAMMSLFLNELYAFQIDXXXXYPLELRKEKSTKAKIKKISEQKNNEVAFDDNINEEVVDVGKIENPVMEEACNMETDIDEISHHISSSVSINNGGLEMSSGNKQQESGSNENAVLPEVIKPCGRINSCMVVGRDTLYIYGGMMEIKDREITLDDLYALNLSKLDEWKCIIPATESEWVEASEDEDEEDDEDDSENDDNSEGSNGSDEDDSDEEDFEAGNNGSRKVGDAVALIKGEGRNLRRKEKRARIQQIRANLGLSDSQRTPMPGESLREFYKRTNLYWQMAAHEHTQHTGKELRKDGFDLAESRYRELKPILDEVSSILLASKPELWYSECSYSYSLLVPLNKLAILEAEQKAEEAEAPETSSRKRGKKKNKIRISKTPIGSQRLVAGFRNSQITRAMKKKATAGTIILLSLLLSLQDVVHLAFALSPLDSNQDVEQSATSRPLEQDKEHVDEVHCSRERSRTAWNIIEEHLLPFMEKENYQVSTKCRLHPNNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHNNLLNVSYGKCLADLCGALHCDLKMDIKSRKSKCNPAAAARNKHLCESLADSCFPINEGPSANRLHELFLHQFCGAHSCTGKQKPFSRGAARQPGIFYMASSILILMLLPIFYVIVYLHRRESRNGIEVLRRISKAGRTSKPL 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30737609 30752671 - ClCG06G017640.2 Cla06g01722 275914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01722 1003 Pfam Galactose oxidase, central domain 447 492 - -
Cla06g01722 1003 Pfam Galactose oxidase, central domain 68 122 - -
Cla06g01722 1003 MobiDBLite consensus disorder prediction 1 37 - -
Cla06g01722 1003 Gene3D - 46 371 IPR015915 GO:0005515
Cla06g01722 1003 Coils Coil 12 32 - -
Cla06g01722 1003 MobiDBLite consensus disorder prediction 412 435 - -
Cla06g01722 1003 SUPERFAMILY Kelch motif 82 491 IPR015915 GO:0005515
Cla06g01722 1003 MobiDBLite consensus disorder prediction 497 545 - -
Cla06g01722 1003 MobiDBLite consensus disorder prediction 500 538 - -
Cla06g01722 1003 Pfam Galactose oxidase, central domain 135 187 - -
Cla06g01722 1003 Pfam Galactose oxidase, central domain 191 239 - -
Cla06g01722 1003 Pfam Domain of unknown function (DUF4110) 579 644 IPR025183 -
Cla06g01722 1003 PANTHER KELCH DOMAIN-CONTAINING PROTEIN 1 692 - -
Cla06g01722 1003 MobiDBLite consensus disorder prediction 12 37 - -
Cla06g01722 1003 ProSitePatterns Zinc finger C2H2 type domain signature. 839 860 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01722 Cla-Chr6:30737609 Cla06g01533 Cla-Chr6:28888423 8.58E-13 dispersed
Cla05g01379 Cla-Chr5:18472698 Cla06g01722 Cla-Chr6:30737609 2.11E-12 transposed
Cla05g01378 Cla-Chr5:18464888 Cla06g01722 Cla-Chr6:30737609 1.34E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01722 - - csv:101218127 1122.84