Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01727 ATGGAGGGTGAAATCCACGTCCACAACCGAGCTCACGTAATATCGAAACATTGGATAACTCCCAACTTTTTAATACAAAACTTCATCCATTCCTATCATGGAAAATTATCTCGTTCCCGCTGCAAGCTCACTACAATCTTTTCTGTTACAAACCAAATGCAAACCCTCTTAAACCCTTCTCATTTCTTCACCTTCCCCAAACTCCCAACCTCTCGGAACTCCAATTCTCCTCATTCTTGCTTTCAATGGCGTCCTCTCCTCTGTCCACCGCTTACTTTTCCCGGCAACTTCAGTTTAAAGTGCTTCAGCTCAGACGAGTTCCCTGTGGACGAGTCCTTCCTCGAGAACTTTGGTCCGAAAGACAAGGAAACAGAGGACGAAGCTCGCAAGCGTAATTGGGTTGAGCGTGGTTGGGCTCCCTGGGAAGAAGTCTTCACACCAGAAGCTGATTTTGCGCGGAAGAGTTTGAATGAAGGCGAGGAAGTGCCGCTTCAGACGCCTGAGGCGATTGAAGCCTTCAAAATGTTGAGCCCGAAGTACCGGAAGCAGAAGATGGAGGAAATGGGGTTGACGGAGGATGACTATTACCGCACGCAATGCGAAATTAAAGGCGAGATACCGGAGCCTCTTGAGACGACGTGGACTAGGCCGCTGGTCCTTCAAGTCGTTCCTCCACGGGACTGGCCTCCGAGGGGTTGGGATGTCGATAGAAAAGAGCTGGAATTTATTAGGGAAGCGCACAAATTGCAAGCTGTGAGGGTGGACTTGGATCGGCTTGAGAAAGATGTGAGGACGGTTACTGAAGATTTGTGTTTGGACAGATACAAAGTGTTTTTGAAACAGTACAAGGAGTGGGTTGCTGCGAATAAAGATAGATTGGAGGAGGAGTCCTACAAGTACGACCAAGATTATCATCCTGGCAGGAGGAAAAGAGGGAAGGACTATAAAGAAGGCATGTATGAGCTTCCGTTTTATTATCCAGGACAAGCTCATACCTACGATGATTGCAGGTGGGTTCCCATTAAAGGTAATGATTGGTATTGGATTCGCCATCACATAAAAGTTGGTATGCCTGTGATCGTAGAGATTCTGGATAAGAACTTTTGCAGTTTTTGTAACTTAACATTCCCCGAGGCAAAGCGAGATCCCTATCGGTTTCGATTTCCTATTGAAATGCGTTTTGTTCATCCTAATATAGATCACCTAATATTTGACTACCCACCAATATTCCACCGCGATGAGGACAGTAATCCAGATGAAGTGCGGCGTGATTGTGGAAGACCTCCTATTCCTAGAAAAGATCCGGGAATTAAACCAGAAGATGAAGCCTTATTGTCAAATCATCCATACGTTGATAAGTGTTATCGGTATATTCCACTTAGAAAAGTGAATAAATCAGAAGAATTTCTTGATGGAATAAATATAGTACTGTGGCAGATACATGTTGCGGAACAAATGATTTTGGACGATCTGGAGCTGAATCCTGATAAGTATAGGGACAAAAAACTTTCAGAGTTATCTGATGAAGAAGATTTTGATGAAGAAAACAATATTGAATATACCAAAGTACGTTATAAGAACAGCTTATTACCAAAGAAGATTCTGAAAACAAGTGTCAAAGAACTTGATTTGGAGGCAGCCTTTTCTGAGCGTCAAGTTCACAATAAACTAAGACAAGAAGCACAGGATAGAGGAGAAGAGTACAAAATTACTAAATTGAGACGGAATATTGAAATGGATGAATATGACCTCATGCATTGGCGTAGATCTTTCGAGGAAAGAGAAGCATTAATCAGAGATATTAGTTGGCACGGGCAATCTAACTCTCCAACTTTAACAGCAAAAATATTGGACATTTTCTCAGATAAACCATACAGTTCATTCCGTCAAGCTCTTGGTCTCCCACTGGAAGAACCTGGAAGATATGTAGATGCTACTTACTTCGGAAAAGATCAATATGACCCATCAAACCCTCTCTACCGTTATGACTACTGGGGTGAACCCAAGAATTCAGAGAAGAGCAAACAAGAACGGATGACAGATGCCCACAACAAATCTATAGTAGGCAAAGGCGTTGTTTGGTATGAAATGTCATACGAGGATGCAATTAAGGAGAGGATGGAAAGAGATGCTCGTTCAAAGGTTGCAAAAGAAGATGATATAGACCAAGATGAAGACGATGAGGACGACGACGACGACGACTTTGATTTCAGTATTTTACGCGACTCAGTAGATGAATTTTCGGCCCAACCTCACGTGAATGGAACTGAATCGTCTAGAATGTCGGATGAGGGTATGTTTGAGGATTAA 2310 42.94 MEGEIHVHNRAHVISKHWITPNFLIQNFIHSYHGKLSRSRCKLTTIFSVTNQMQTLLNPSHFFTFPKLPTSRNSNSPHSCFQWRPLLCPPLTFPGNFSLKCFSSDEFPVDESFLENFGPKDKETEDEARKRNWVERGWAPWEEVFTPEADFARKSLNEGEEVPLQTPEAIEAFKMLSPKYRKQKMEEMGLTEDDYYRTQCEIKGEIPEPLETTWTRPLVLQVVPPRDWPPRGWDVDRKELEFIREAHKLQAVRVDLDRLEKDVRTVTEDLCLDRYKVFLKQYKEWVAANKDRLEEESYKYDQDYHPGRRKRGKDYKEGMYELPFYYPGQAHTYDDCRWVPIKGNDWYWIRHHIKVGMPVIVEILDKNFCSFCNLTFPEAKRDPYRFRFPIEMRFVHPNIDHLIFDYPPIFHRDEDSNPDEVRRDCGRPPIPRKDPGIKPEDEALLSNHPYVDKCYRYIPLRKVNKSEEFLDGINIVLWQIHVAEQMILDDLELNPDKYRDKKLSELSDEEDFDEENNIEYTKVRYKNSLLPKKILKTSVKELDLEAAFSERQVHNKLRQEAQDRGEEYKITKLRRNIEMDEYDLMHWRRSFEEREALIRDISWHGQSNSPTLTAKILDIFSDKPYSSFRQALGLPLEEPGRYVDATYFGKDQYDPSNPLYRYDYWGEPKNSEKSKQERMTDAHNKSIVGKGVVWYEMSYEDAIKERMERDARSKVAKEDDIDQDEDDEDDDDDDFDFSILRDSVDEFSAQPHVNGTESSRMSDEGMFED 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30809998 30816968 + ClCG06G017720.2 Cla06g01727 275919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01727 769 Coils Coil 249 269 - -
Cla06g01727 769 MobiDBLite consensus disorder prediction 415 439 - -
Cla06g01727 769 MobiDBLite consensus disorder prediction 720 739 - -
Cla06g01727 769 MobiDBLite consensus disorder prediction 707 769 - -
Cla06g01727 769 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 10 627 755 IPR044967 GO:0000427|GO:0003723
Cla06g01727 769 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 10 93 456 IPR044967 GO:0000427|GO:0003723
Cla06g01727 769 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 10 477 603 IPR044967 GO:0000427|GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01727 - - - csv:101217647 1191.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g156 . . Bda06g00739 . . . . Bma12g01073 . . Cma10g00074 . Car10g00064 . Sed08g0047 . . Bhi02g00547 Tan09g2351 Cmetu02g1227 . Hepe09g0066 . . Cla06g01727 Cam06g1917 Cec06g1967 Cco06g1971 Clacu06g1873 Cmu06g1815 Cre06g2630 . . . Cone19ag0195 . . . . . Blo15g00218 . . Bpe07g00880 . . . . Cmo10g00073 . . . . . . . . . . . . . . . . . . . . . Lsi06g01622 Csa01g00074 Chy02g02645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011208 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01727 Cla_Chr06 FPKM 28.75976 31.080187 25.244944 26.521177 22.472519 29.223845 27.637125 55.900032 55.63456 50.391796