Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01728 ATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGAAAGTATTCACTTTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCGGATTACCGACATGCCGTGGAAACAGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGTATGGATACTGGAATCTCTACTCTTGATGATTCACGGGCCATTAAGAGGAAACGTATTAGTATGAATGCAGATGGTTTCGATTGTTTTGGTGCTCCTCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGATAAGGTTGAAGTTAGAACTTGAACAGGTTCGATTGCTGCAAAAAAAAGCTTCTAATGTTAGCTCAATTTTTGCCGTCTCTTCATCTAGTAATATCCAGAGTTCTAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTTTAATAGATTGTCTGAGGTATCAGTTCCTCCTGCTAAAAAGCCACTGCCCTCTGGGCGTAATGGGCCTTCTGCTAAAAGAAGCTCATCTGGGCGGTTTGAGTCTGCTAAACCAGCTGCTGTATCTGCTTCCTCGACAGCGTCATTGAAACAATGTGAACAGCTGCTGCAACGCTTGATGTCACATACGTTTGGTTGGGTTTTTAACACTCCAGTGGATGTGGTCAAGTTGAATATTCCAGATTATTTTACTGTCATAAAGCATCCTATGGATCTGGGCACTGTAAAGTCTAAGATAACTGCAGGAGAATATACACATCCGTTGGATTTTGCTGCTGATGTTCGACTTACTTTTTCAAACGCGATGACTTACAACCCTCCTGGGAATGACGTTCATACCATGGCTAAGACACTAAGTAAATTTTTTGAAGTTAGATGGAAAACTATAGAGAAGAAGCTCCCTGTGACAAGTGAAGAACAACGCCAAGTACCTTCAGCCACATTTGTTCCTAAGGAAACTGAAAGTACTCTGCCAGTGCCACCTTCAAAAAAGACAAAAATCCCTACAAATGACCCTGATGTTCAGCCAACTAGTGTGGTAAGAATCATGACCGAGCAGGAGAAGCATAAGCTAAGTGTAGAGTTGGAGGCTTTGCTGGGAGAGTTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGCTGGCGAGGATGAGATTGAAATTGACATTGATGCTCTTAGTGATGATACCTTGTTTGCATTGAGGAAGCTATTAGACGATTATACGATGGAAAAGCAGAAACGCACAAAGGCTGAACCATGTGTAGTGGAGCTTCATACCGAATCAGGATTTAGCAATTCATCAATGCCACCCAGTAAAGGAAATGATCCCATTGATGAGGATGTAGACATTGTTGGTGGGAATGACCCCCCTGTATCAAGCTATCCTCCAATAGAGATAGAAAAAGATGCAGTTCGTAGGGATAGTAAATGCAGTAATTCCAGTAGCTCGAGTAGTGAATCAGGTTCTTCATCTAGTGATTCTGGCTCAGAAAGCTTGTCGGGAAGTGAATCTAATGCTGCTAAAGCTTTAGATAGTAATGTGGCTCCAAAGTTTGCTGGCAGAGGTTTTGCCTCCTGCGATTTGCTCATCATCGGTGCTTTTAATGAAGTAAGCTGTTTTTTCCTCAACTGTGCAGATGAAGAAAATGGGATTGATCTAGTTGAGCAAACCACCCAGGCCAATACAAACACTATCGAGTCAGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTATTAAGGAACCGTTTTGCTGACACAATACTGAAAGCTCGAGAGAAGGCACTTGAAAAGGGTGACAAACGGGATCCTGAAAAAGTGCGAATGGAAAGGGAGGAACTTGAAAGACAACAAAGAGAAGAAAAAGCCCGGTTGCAAGCAGAGGCAAAAGCTGCAGAGGATGCTCGCAGGAAGGCTGAAGCTGAAGCTGCGGCCGAAGCTAAGAAGAAAAGAGAGTTGGATAGAGAAGCTGCACGTCAGGCCTTACTTAAGATGGAGAAGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTGGAGATGCTTAGGGCTTCCAACGATGAGCATCTACCGAACTTCACAGAGGAGTCAAGCCCAGAACATTCTCAAAATGGATTTGGCAGTTTCAAGCTTCAAGGTAGTAACCCCTTAGAACAGCTTGGTTTGTACATGAAGATGGACGAGGAAGATGAAGAGGAAGAAAGTGAACCACCCCAAAGTGTTAATAAGCCAGCAAACGATGTTGAAGAAGGGGAAATCGATTAG 2358 43.64 MAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRISMNADGFDCFGAPLQVFSLSTLSRSERKDLEIRLKLELEQVRLLQKKASNVSSIFAVSSSSNIQSSSDQHRGAPPETFNRLSEVSVPPAKKPLPSGRNGPSAKRSSSGRFESAKPAAVSASSTASLKQCEQLLQRLMSHTFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYTHPLDFAADVRLTFSNAMTYNPPGNDVHTMAKTLSKFFEVRWKTIEKKLPVTSEEQRQVPSATFVPKETESTLPVPPSKKTKIPTNDPDVQPTSVVRIMTEQEKHKLSVELEALLGELPESIIDFLKEHSSNSQAGEDEIEIDIDALSDDTLFALRKLLDDYTMEKQKRTKAEPCVVELHTESGFSNSSMPPSKGNDPIDEDVDIVGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESGSSSSDSGSESLSGSESNAAKALDSNVAPKFAGRGFASCDLLIIGAFNEVSCFFLNCADEENGIDLVEQTTQANTNTIESDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQQREEKARLQAEAKAAEDARRKAEAEAAAEAKKKRELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDEHLPNFTEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKMDEEDEEEESEPPQSVNKPANDVEEGEID 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30817363 30823030 - ClCG06G017730.1 Cla06g01728 275920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01728 785 MobiDBLite consensus disorder prediction 313 351 - -
Cla06g01728 785 Pfam Bromodomain 208 292 IPR001487 GO:0005515
Cla06g01728 785 MobiDBLite consensus disorder prediction 712 785 - -
Cla06g01728 785 MobiDBLite consensus disorder prediction 712 726 - -
Cla06g01728 785 CDD Bromo_plant1 205 302 IPR037377 -
Cla06g01728 785 Coils Coil 637 685 - -
Cla06g01728 785 Coils Coil 106 126 - -
Cla06g01728 785 Pfam Bromodomain extra-terminal - transcription regulation 359 420 IPR027353 -
Cla06g01728 785 MobiDBLite consensus disorder prediction 491 518 - -
Cla06g01728 785 PRINTS Bromodomain signature 235 251 IPR001487 GO:0005515
Cla06g01728 785 PRINTS Bromodomain signature 251 269 IPR001487 GO:0005515
Cla06g01728 785 PRINTS Bromodomain signature 219 232 IPR001487 GO:0005515
Cla06g01728 785 PRINTS Bromodomain signature 269 288 IPR001487 GO:0005515
Cla06g01728 785 PANTHER TRANSCRIPTION FACTOR GTE10 25 769 - -
Cla06g01728 785 MobiDBLite consensus disorder prediction 624 684 - -
Cla06g01728 785 SMART bromo_6 197 307 IPR001487 GO:0005515
Cla06g01728 785 ProSiteProfiles Bromodomain profile. 216 288 IPR001487 GO:0005515
Cla06g01728 785 MobiDBLite consensus disorder prediction 442 518 - -
Cla06g01728 785 MobiDBLite consensus disorder prediction 142 193 - -
Cla06g01728 785 Gene3D - 354 430 IPR038336 -
Cla06g01728 785 MobiDBLite consensus disorder prediction 727 746 - -
Cla06g01728 785 Gene3D - 186 321 IPR036427 GO:0005515
Cla06g01728 785 PANTHER TRANSCRIPTION FACTOR GTE8 25 769 - -
Cla06g01728 785 MobiDBLite consensus disorder prediction 314 351 - -
Cla06g01728 785 ProSiteProfiles NET domain profile. 349 430 IPR027353 -
Cla06g01728 785 SUPERFAMILY Bromodomain 184 310 IPR036427 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01728 - - - csv:101217420 1234.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02510 Cla-Chr1:38776078 Cla06g01728 Cla-Chr6:30817363 4.59E-11 dispersed
Cla06g01728 Cla-Chr6:30817363 Cla10g00935 Cla-Chr10:22129447 7.28E-57 dispersed
Cla01g02356 Cla-Chr1:37300338 Cla06g01728 Cla-Chr6:30817363 6.30E-13 transposed
Cla02g00347 Cla-Chr2:3401811 Cla06g01728 Cla-Chr6:30817363 6.14E-13 transposed
Cla05g01390 Cla-Chr5:18724833 Cla06g01728 Cla-Chr6:30817363 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01728 Cla_Chr06 FPKM 13.014925 16.130566 15.056857 16.331678 12.860761 8.121626 11.226504 25.137049 32.516312 30.949984