Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01731 ATGACGTCGACGTATCTTCTCTATGAATCTGCTTCTGGTTATGCTCTGTTTCATGTCCATGGCCTTGACGAAATTGGGCAGAACACGGAAGCCGTTCGGAGCTCCGTCTCCGACCTTAACCGCTTCGGCAAGGTCGTGAAGCTTGCTGCTTTCCACCCTTTCGAGTCGGCTCTCGATGCTCTCAAGCAGTGCAACTCAGTCTCTGAAGGGCTCATGACTGACGAGTTGAGGAGTTTTTTGGAAATTAACCTTCCAAAAGTTAAGGAAGGTAAGAAGGCCAAGTTCGTTTTGGGACTAGCTGAACCCAAAATTGGGTCAAACATCTTTGAAGAGACTAAAATCCCATGCCAAAGCAATGAGTTTGTTCTGGAGCTGCTCCGGGGTGTGCGTCTACACTTTGACAAATTTATCAAAGACCTCAAGCCAGGGGATTTGGAGAAGGCCCAACTTGGTTTGGGACACAGTTACAGTCGAGCTAAAGTAAAGTTCAATGTTAACCGTGTTGATAATATGGTGATTCAGGCGATCTTCCTTCTTGACACTCTAGATAAGGACATCAATTCCTTCTCAATGAGAGTCAGAGAGTGGTATTCGTGGCATTTCCCTGAGTTGGTGAAGATTGTTAGTGACAATTATCTTTATGCTAAAGTTGCTAAATTTATTGAGGACAAGTCGAAGTTGGCAGAAGATAAAATCCCTGCCTTGACTGACATAATTGGCGATGAAGATAAAGCGAAGGAGATTGTTGAAGCAGCCAAAGCCTCCATGGGCCAGGATTTGTCTGCCATTGACTTGATTAATGTCCAGCAATTTGCACAGAGGGTGATGGATCTTTCTGAATACAGGAAGAAGCTTTATGATTATCTAGTTGCTAAAATGAATGATATTGCTCCCAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGGGCCCGTTTAATTTCTCATGCGGGCAGTCTCACAAATTTGGCCAAGTGCCCTTCTTCCACCCTTCAGATTCTTGGTGCGGAGAAAGCACTCTTCAGGGCTTTGAAAACAAGAGGAAACACTCCTAAATATGGTCTGATTTTTCATTCTTCTTTCATTGGGCGAGCATCTGCACGGAACAAAGGCCGAATGGCTCGTTATCTTGCAAATAAATGTTCTATTGCATCACGTATTGATTGCTTTGCAGAGAGCAGCACCACAACCTTTGGAGAAAAACTTCGTGAGCAAGTTGAAGAGCGCCTTGACTTTTATGACAAGGGAATAGCACCTCGTAAAAACATAGATGTTATGAAAGCTGCAATTGAAAGTGCTGATAACAAAGCAACTGATATGGATGTAGAAGAAGTGCCAAGTGAAGCTTCAGGGAAGAAGAGCAAGAAAAAGAAATCAAAAGCTAATGTGAATGGCGAAGTTGAAGACAGGCCAAGTGCGACTGAAAACGGTGATGTTTCAGAGGATACAAAATCAGAAAAGAAGAAAAAGAAGGAGAAGCGAAAGTTGGATAGGGAAACAGAGGAGCAGCAGCAGGCTGCAGAAATCGTAAATGGAGTAAACGGGGAGGAGGAATCTGGCAAGAAGAAGAAGAAAAAGAAGAGTAAGGATGAAAATAAGGGGGATGATCATGTTGCTGCAGAAGATGCTGTAGAAATGCCCCTTGTGGCTGTTTTTGGTCTCCGACCTCTATATTTTTGTCCATCAGCAAAACTTATGCCAATATGCACGGTTGAAGAAGAAGAAGACGACGACGACGACGACGACCAAACAGCCATGGCCAGTAGTTCTGGATCAGCGAGCTTAGAAGATGTCCCTTCCATCCATCTCATGACCGAGCTCCTCCGTCGCATGAAATGCGCTTCAAAACCCGACAAGCGCCTCATTCTCATTGGTCCACCTGGATCAGGAAAAGGCACCCAATCTCCAATCATCAAGGATGAGTACTGCTTGTGTCACTTGGCAACTGGAGATATGTTAAGAGCTGCTGTTGCTGCTAAAACTCCACTTGGTGTTAAGGCTAAGCAGGCCATGGACAAGGGTGAACTTGTGTCTGATGACTTGGTTGTTGGCATCATTGAGGAAGCAGTGAAGAAGCCTTCATGTCAGAAAGGTTTCATTCTTGATGGATTTCCCAGAACCGTGGTCCAAGCACAGAAGCTGGATGAGATGCTAGAAAAGCAGGATGCTAAAATTGATAAGGTGCTTAATTTTTCGATTGATGATGCGATCTTGGAGGAGAGGATTACTGGACGATGGATACACCAAGCGAGCGGAAGGTCTTATCACACAAAATTTGCTCCTCCAAAGGTTGCTGGTGTCGATGATGTAACGGGAGAACCTTTGATTCAACGTAAGGATGATACTGCAGCAGTTCTCAAATCTCGGCTGGAGGCTTTCCACAAGCAAACAGAACCGGTGATTGATTACTATTCCAAGAAGGAGATTGTCGCAGATCTTCAAGCAGAGAAGCCTCCCAAACAGGCGTATGCCGCTATGAGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATACTCCGCTCTGTGCTCACCGCACGGCTCCGTGA 2550 45.02 MTSTYLLYESASGYALFHVHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALKQCNSVSEGLMTDELRSFLEINLPKVKEGKKAKFVLGLAEPKIGSNIFEETKIPCQSNEFVLELLRGVRLHFDKFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVSDNYLYAKVAKFIEDKSKLAEDKIPALTDIIGDEDKAKEIVEAAKASMGQDLSAIDLINVQQFAQRVMDLSEYRKKLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAESSTTTFGEKLREQVEERLDFYDKGIAPRKNIDVMKAAIESADNKATDMDVEEVPSEASGKKSKKKKSKANVNGEVEDRPSATENGDVSEDTKSEKKKKKEKRKLDRETEEQQQAAEIVNGVNGEEESGKKKKKKKSKDENKGDDHVAAEDAVEMPLVAVFGLRPLYFCPSAKLMPICTVEEEEDDDDDDDQTAMASSSGSASLEDVPSIHLMTELLRRMKCASKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKQAMDKGELVSDDLVVGIIEEAVKKPSCQKGFILDGFPRTVVQAQKLDEMLEKQDAKIDKVLNFSIDDAILEERITGRWIHQASGRSYHTKFAPPKVAGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKEIVADLQAEKPPKQAYAAMSGEHTVFFSKRRKNTPLCAHRTAP 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30851894 30861163 - ClCG06G017760.2 Cla06g01731 275923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01731 849 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Cla06g01731 849 Pfam Adenylate kinase, active site lid 744 779 IPR007862 GO:0004017
Cla06g01731 849 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
Cla06g01731 849 TIGRFAM adk: adenylate kinase 619 825 IPR006259 GO:0004017|GO:0005524|GO:0016776
Cla06g01731 849 Coils Coil 485 508 - -
Cla06g01731 849 Gene3D - 142 299 - -
Cla06g01731 849 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Cla06g01731 849 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 3 531 IPR045056 GO:0030515|GO:0031428|GO:0032040
Cla06g01731 849 MobiDBLite consensus disorder prediction 459 503 - -
Cla06g01731 849 MobiDBLite consensus disorder prediction 434 537 - -
Cla06g01731 849 ProSitePatterns Adenylate kinase signature. 698 709 IPR033690 -
Cla06g01731 849 SUPERFAMILY Nop domain 164 413 IPR036070 -
Cla06g01731 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 808 IPR027417 -
Cla06g01731 849 SMART NOSIC_2 171 223 IPR012976 -
Cla06g01731 849 Gene3D Nop domain 300 412 IPR042239 -
Cla06g01731 849 CDD ADK 619 819 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cla06g01731 849 MobiDBLite consensus disorder prediction 434 451 - -
Cla06g01731 849 Pfam Adenylate kinase 622 807 - -
Cla06g01731 849 Hamap Adenylate kinase [adk]. 618 826 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cla06g01731 849 PRINTS Adenylate kinase signature 621 634 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cla06g01731 849 PRINTS Adenylate kinase signature 794 808 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cla06g01731 849 PRINTS Adenylate kinase signature 698 714 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cla06g01731 849 PRINTS Adenylate kinase signature 777 792 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cla06g01731 849 PRINTS Adenylate kinase signature 649 663 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cla06g01731 849 PANTHER BNACNNG34340D PROTEIN 3 531 - -
Cla06g01731 849 MobiDBLite consensus disorder prediction 572 594 - -
Cla06g01731 849 MobiDBLite consensus disorder prediction 514 537 - -
Cla06g01731 849 Gene3D - 591 827 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01731 K14564 NOP56; nucleolar protein 56 - csv:101216223 961.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01731 Cla-Chr6:30851894 Cla11g00333 Cla-Chr11:3806489 1.41E-30 dispersed
Cla02g01602 Cla-Chr2:30742398 Cla06g01731 Cla-Chr6:30851894 4.28E-108 transposed
Cla05g02530 Cla-Chr5:36694953 Cla06g01731 Cla-Chr6:30851894 3.18E-17 transposed
Cla03g00344 Cla-Chr3:4002244 Cla06g01731 Cla-Chr6:30851894 5.77E-149 wgd
Cla05g01399 Cla-Chr5:18871171 Cla06g01731 Cla-Chr6:30851894 2.14E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01731 Cla_Chr06 FPKM 2.093795 1.828114 8.415602 6.978721 96.619972 93.739944 92.275299 9.390615 9.814456 9.557211