Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01733 ATGCAATTAGAATTTTTGGGCGGTTCTTCCGTCCTCAGTTCACCACATTCATCTCCTTACAAGCAAAGGATGGCATCCTTTGGCGCTCTTTCACTATGCCCCTGCAGCCCGCTGTCACGCCCTCATCACACAGTTCGTTCTATTTATTGTTGCAGTGGATCTCCTACAGTTTTGGGCAAAAATGTCTCGAAAGTACCTCGAAAAAGACCAGGAAGATTGGAAGGTGCTAGAAGAAGCATGGAAGACTCTGTTCAGCGCAAGATGGAACAATTTTATGAAGGTTCGGATGGTCCACCTCTCCGAGTTCTTCCAATTGGTGGCCTTGGTGAAATTGGGATGAATTGTATGCTTGTTGGGAATTATGACCGCTACATCCTGATTGATGCTGGCGTCATGTTTCCTGACCATGATGAGCTTGGTGTCCAGAAAATTATACCTGATACCACATTTATCAAAAGATGGAGTCACAAAATCGAAGCTGTTGTTATTACACATGGCCATGAAGATCACATTGGTGCGTTGCCTTGGGTAATTCCCGCTTTGGATTCTCATACACCAATATATGCTTCTTCCTTTACAGTGGAGCTTATAAAAAAGCGTCTGAAGGAAAATGGGATTTTTGTTCCTTCTCGACTTAAGGTATTTAAGATGAAAAAGAGATTCACAGCTGGGCCATTTGAAATAGAGCCAATTAGGGTTACCCATTCCATTCCGGATTGTTGTGGATTAGTTCTTCGATGTGCTGATGGTATAATTCTTCATACGGGAGACTGGAAGATCGATGAATCGCCATTGGATGGTAAAGTCTTCGATCGAGAAACTTTGGAAGAACTATCAAAAGAAGGAGTGACTCTTATGATGAGTGACTCAACAAATGTACTATCTCCTGGAAGGACTATTAGTGAGTCTGTGGTAGCAGATGCGCTTTTAAGACGTATCTCTGCCGCTAAAGGAAGGGTCATCACGACTCAGTTTGCTTCAAATATACACCGCCTTGGAAGTGTGAAAGCAGCCGCGGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCTTTACGGACATATCTGGATGCAGCCTGGAAAGATGGGAAGGCACCAATTGATCCATCGACCTTGGGAGTGGTGGCTTTAGAAGATGTTCCAAAAGCGTTTGTTTTAAATGGAAATGTGAAGTTCTACAGGTTACAGAGATTCTTGCCATTGTGTGGTAAATCTGGTTTTAAGTGTATATATTCATCTAATGATTCTCATCCCACAACTGATAAGGTAAAAGTGGAGGACATTGATGCCTATGCTCCAAAAGATTTATTGATTGTCACAACTGGCTCACAAGTTATTCCTGGTAACGAATCTAGAGTTATGAAAATGTTGAACCGTATATCAGAGATTGGATCAAATATAATCATGGGCAAGAATGAGTTGCTGCACACATCTGGTCATGGATATCGTGGAGAATTAGAGGAAGTACTTCAAATTGTTAAGCCGCAGCATTTTTTACCCATTCATGGAGAGCTTTTATTCCTCAAGGAGCATGAACTGCTGGGCCGGTCGACAGGCATTCGGCACACAACTGTTATAAAAAATGGAGAAATGCTTGGAGTATCTCATCTAAGAAACAGAAGAGTTTTATCCAATGGTTTCACCTCTCTTGGGAGGGAGAATTTACAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGATCCTCATCTGAGCTTTTCGTTGATGAGAGACTAAAGATTGCAACGGATGGCATTATAGTGGTCAGTATGGAAATCTTGCGACCTCAAAGTGTAGATGGTTCAAACGAGACTGGCATCCAAGGAAAGCTAAGGATCACTACAAGATGTTTATGGCTTGACAAGGGGAAGCTTTTAGATGCACTTCATAAAGCCGCTCATGCAGCACTTTCAAGCTGCCCGGTGAATTGTCCTCTAGCTCACATGGAAAGAACCGTGTCTGAGCTTTTGAGGAAGATGGTTAGAAAATATAGTGGTAAGAGGCCTGAAGTCATAGTCATGGCTGTGGAGAACCCTGGAGGAGTTCTATCCGAAGAGCTTGGAGCAAGGCTTTCAGGCAAGTCCAATACTGGATTTGGGATGTCAGCATTGAGAAAAGCAGTTGATGGACAACCAACTAAGAGCCACAACCCTGTAATCTTGGTTTTCAGGCATAATCCAGATACCAGGTTGAGGGCGATTAATATAGAAGTATTAGGGCTTATTATAAACCCTACCAAAATTCAGAAACTTATAAATTTAAAACGAGCTTTACATGCAAGGTTTACAGGTGACTTTAAGCCTATTTTTGGTCTATATTTCTTTGCAATGTATTTGAGTCGAAAAGTGTTGAGGGTCTCTCTTGTCGAACCATCTCCTGCAATGCATGGGGTTATTATTTGTGTTGGTACAGGTTATTATTTGGAACCTGGAAGACTACTTCCTGAAGATGACTACGATACCTCGAGCTCGAACTTGACAGAGACACAATCCTTTGATAACGAGGGTTTGGAGGATTTCTGGAGACCATTTATCACGCCATCCTCTCCTGCTAAAGAATTGGCAAAGGATAACGAAGGTTCGGTTCAACAATCAAAAAATATGTTGGAGATTACAAACGAACGTGAAGAAGTTAGTGACGACAAGTCACTGAAAACATCAAATTCTGACGTGAAGCCTCTGAAACGCAATAAATGGAAACCTGAGGAGATCAAGAAACTTATTAAATTGCGGGGGGAATTGCATGCCAGGTTTCAAGTGGCCAGGGGACGAATGGCATTATGGGAAGAGATATCCAATGGTATGTCGGCTGATGGAATTAATCGGAGTCCCGGACAGTGCAAATCTCTGTGGGCATCTCTGGTTCAGAAATTTGAGGTTTGTTCTTCTGTTTCTACTTTCAATTTTGAACTTGCTCTGCCCCTTTAA 2928 42.11 MQLEFLGGSSVLSSPHSSPYKQRMASFGALSLCPCSPLSRPHHTVRSIYCCSGSPTVLGKNVSKVPRKRPGRLEGARRSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDHDELGVQKIIPDTTFIKRWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIYASSFTVELIKKRLKENGIFVPSRLKVFKMKKRFTAGPFEIEPIRVTHSIPDCCGLVLRCADGIILHTGDWKIDESPLDGKVFDRETLEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLGVVALEDVPKAFVLNGNVKFYRLQRFLPLCGKSGFKCIYSSNDSHPTTDKVKVEDIDAYAPKDLLIVTTGSQVIPGNESRVMKMLNRISEIGSNIIMGKNELLHTSGHGYRGELEEVLQIVKPQHFLPIHGELLFLKEHELLGRSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFTSLGRENLQLKYSDGDKAFGSSSELFVDERLKIATDGIIVVSMEILRPQSVDGSNETGIQGKLRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSELLRKMVRKYSGKRPEVIVMAVENPGGVLSEELGARLSGKSNTGFGMSALRKAVDGQPTKSHNPVILVFRHNPDTRLRAINIEVLGLIINPTKIQKLINLKRALHARFTGDFKPIFGLYFFAMYLSRKVLRVSLVEPSPAMHGVIICVGTGYYLEPGRLLPEDDYDTSSSNLTETQSFDNEGLEDFWRPFITPSSPAKELAKDNEGSVQQSKNMLEITNEREEVSDDKSLKTSNSDVKPLKRNKWKPEEIKKLIKLRGELHARFQVARGRMALWEEISNGMSADGINRSPGQCKSLWASLVQKFEVCSSVSTFNFELALPL 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30884184 30899918 + ClCG06G017790.2 Cla06g01733 275925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01733 975 MobiDBLite consensus disorder prediction 872 893 - -
Cla06g01733 975 PANTHER RIBONUCLEASE J 17 445 - -
Cla06g01733 975 PANTHER RIBONUCLEASE J 809 963 - -
Cla06g01733 975 PANTHER RIBONUCLEASE J 444 716 - -
Cla06g01733 975 Pfam Myb/SANT-like DNA-binding domain 896 961 IPR044822 -
Cla06g01733 975 SUPERFAMILY Metallo-hydrolase/oxidoreductase 100 533 IPR036866 -
Cla06g01733 975 Gene3D - 85 305 IPR036866 -
Cla06g01733 975 Gene3D - 447 547 IPR036866 -
Cla06g01733 975 Gene3D - 306 446 IPR042173 -
Cla06g01733 975 Pfam Beta-lactamase superfamily domain 123 259 IPR001279 -
Cla06g01733 975 CDD GT1 897 959 - -
Cla06g01733 975 ProSiteProfiles Myb-like domain profile. 891 955 IPR001005 -
Cla06g01733 975 SMART Lactamase_B_5a 112 309 IPR001279 -
Cla06g01733 975 CDD RNaseJ_MBL-fold 103 290 - -
Cla06g01733 975 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 473 513 IPR011108 -
Cla06g01733 975 Gene3D - 899 959 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01733 - - - cpep:111780336 1219.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01733 Cla-Chr6:30884184 Cla10g02096 Cla-Chr10:36676511 2.52E-07 dispersed
Cla01g00116 Cla-Chr1:1043610 Cla06g01733 Cla-Chr6:30884184 2.56E-08 transposed
Cla09g01643 Cla-Chr9:32801893 Cla06g01733 Cla-Chr6:30884184 1.59E-06 transposed
Cla06g01733 Cla-Chr6:30884184 Cla08g01699 Cla-Chr8:29590562 7.74E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g135 . . . . . . . . . . Cma10g00071 Cma11g00042 Car10g00058 Car11g00038 Sed08g0040 . Cpe04g01607 Bhi02g00533 Tan09g2359 Cmetu02g0049 . Hepe09g0058 . . Cla06g01733 Cam06g1924 Cec06g1974 Cco06g1978 Clacu06g1880 Cmu06g1822 Cre06g2637 . . . . . . . . . . . . . . . . . Cmo10g00066 Cmo11g00043 . . . . . . . . . . . . . . . . . . . . Lsi06g01633 Csa01g00066 Chy02g02654 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006250 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 3 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61347 PF12706 Lactamase_B_2 1.70E-10 CL0381 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01733 Cla_Chr06 FPKM 3.707643 3.249956 1.924247 1.155622 10.102149 8.580448 8.174522 0.404058 0.192727 0.324887