Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01738 ATGGTAATGGCAGCGACAGAGGAAAGTCCGAGAAGCCCAGAGGCTAAGGTGGGGATGCAAGTAGAAGATTTATGGGATATTCAAGAACCGCAGCTCAGTCCTACTGAAAAGCTTAATGCTTGCTTTGAAAGCATCCCTGTTTCTGCCTTTCCTCCTGCCCCTTCTCATCAAGGAATTGAGATAAAATCGGACAGCAGTTTAGCTGAAGCGGTTCAAATTTTGGCTGAACATAAGATCCTCAGTGCGCCTGTGGTGGACGTGGATGCACCTGATCATGCGAGTTGGATTGATAGATACATTGGTATTGTTGAGTTTGCTGGCATTGTTGTTTGGATTCTTCATCAGTCGGAACCTCCATCCCCGAGAAGTCCTAGTGATGGAAGTGCTCTGGCTGCAGCAACAAATGGTGTGATATCTCCTTTAGAACAGCAGGTATTGGGCCCGGAATCCGCTGCAGCGACCTCGGGAAGCTTTTTTGAATCGTTAACTTCCTCTGAATTGTACAAGAGCACACAGGTGCGAGATATTTCGGGATCTTTCCGTTGGGCCCCATTTCTTGCTTTGCAGACGTCGAATTCCTTCTTGACCATGCTCTTGCTGTTATCAAAGTACAAAATGAAGAGCATACCAGTGGTGGACTTAGGGGAGGGAAAGATTGAGAACATCATCACACAATCAGCTGTGATTCACATGTTAGCAGAATGTGCGGGGCTTCAATGGTTTGAAAGATGGGGAACAAAGACGCTTTCCGAGCTCGGTCTTCCTATGATGTCACCTGCGTCTATTGTCAAGGTGTACGAGGACGAGCCTGTTCTACAAGCATTCAAACTTATGAGGAAGAAGAGGGTTGGAGGTATACCTGTTATTGAAAGGGGTGGTAGGGCAGTAGGCAACATTAGTTTAAGAGATATTCATTTCTTGCTCACTGCACCAGAAATCTATCACGATTACAGATCGATAACGGCGAAAAACTTTCTGACTGCGGTTAGAAACTACTTAGAGAAGCATGAAGAGTTCTCTCCCATGCTGAGCAACATGATTACGTGCAAGAAGGACGACACAATAAAGGATCTGATTTTGATGCTTGACTCCAAGAAGATCCACCGCGTGTATGTAGTCGACAACGATGGCAATCTGGAAGGAGTGATCACTCTCAGAGACATCATCTCGAGGTTAGTCCATGAACCGCGCGGTTACTTTGGCGATTTCTTCGACGGTGTTCTGCCGTTGCCTCAGAATAGTCGGGTTTGA 1251 46.36 MVMAATEESPRSPEAKVGMQVEDLWDIQEPQLSPTEKLNACFESIPVSAFPPAPSHQGIEIKSDSSLAEAVQILAEHKILSAPVVDVDAPDHASWIDRYIGIVEFAGIVVWILHQSEPPSPRSPSDGSALAAATNGVISPLEQQVLGPESAAATSGSFFESLTSSELYKSTQVRDISGSFRWAPFLALQTSNSFLTMLLLLSKYKMKSIPVVDLGEGKIENIITQSAVIHMLAECAGLQWFERWGTKTLSELGLPMMSPASIVKVYEDEPVLQAFKLMRKKRVGGIPVIERGGRAVGNISLRDIHFLLTAPEIYHDYRSITAKNFLTAVRNYLEKHEEFSPMLSNMITCKKDDTIKDLILMLDSKKIHRVYVVDNDGNLEGVITLRDIISRLVHEPRGYFGDFFDGVLPLPQNSRV 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30936535 30939725 + ClCG06G017850.1 Cla06g01738 275930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01738 416 ProSiteProfiles CBS domain profile. 342 400 IPR000644 -
Cla06g01738 416 SMART cbs_1 184 233 IPR000644 -
Cla06g01738 416 SMART cbs_1 57 113 IPR000644 -
Cla06g01738 416 SMART cbs_1 261 309 IPR000644 -
Cla06g01738 416 SMART cbs_1 345 393 IPR000644 -
Cla06g01738 416 CDD CBS_pair_SF 262 389 - -
Cla06g01738 416 ProSiteProfiles CBS domain profile. 257 317 IPR000644 -
Cla06g01738 416 SUPERFAMILY CBS-domain pair 30 233 IPR046342 -
Cla06g01738 416 ProSiteProfiles CBS domain profile. 54 120 IPR000644 -
Cla06g01738 416 SUPERFAMILY CBS-domain pair 248 402 IPR046342 -
Cla06g01738 416 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 3 416 - -
Cla06g01738 416 Gene3D - 37 239 IPR046342 -
Cla06g01738 416 Gene3D - 242 395 IPR046342 -
Cla06g01738 416 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 3 416 - -
Cla06g01738 416 Pfam CBS domain 257 304 IPR000644 -
Cla06g01738 416 Pfam CBS domain 342 393 IPR000644 -
Cla06g01738 416 CDD CBS_pair_SF 198 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01738 - - - csv:101214786 767.689
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02467 Cla-Chr5:36107121 Cla06g01738 Cla-Chr6:30936535 1.54E-90 dispersed
Cla06g01738 Cla-Chr6:30936535 Cla11g00404 Cla-Chr11:4560155 6.53E-38 dispersed
Cla07g01186 Cla-Chr7:28838729 Cla06g01738 Cla-Chr6:30936535 4.83E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g117 . . Bda06g00730 . Bpe12g00484 . . . . . Cma10g00066 Cma11g00036 Car10g00054 Car11g00033 . . Cpe04g01613 Bhi02g00681 . . . . . . Cla06g01738 Cam06g1928 . Cco06g1982 Clacu06g1884 . Cre06g2641 . . Cone13ag0216 Cone19ag0205 . . . . . Blo15g00210 . . . . . . . Cmo10g00062 Cmo11g00038 . . . . . . . . . . . . . . . . . . . . Lsi06g01638 Csa01g00060 Chy02g02659 Cme02g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003995 2 1 2 1 2 1 2 1 0 2 1 1 2 2 2 2 0 2 2 1 2 1 1 1 1 0 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01738 Cla_Chr06 FPKM 22.448048 22.351475 28.962677 29.577765 20.844481 17.640324 20.23208 13.555615 13.551078 12.893003