Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01745 ATGGACACCAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTCCCGGCCCCTCCCTTCCACCACCTCCTTCAGCAGCAGCAGCAACAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTCTCGCCCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAGGCCCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATTACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGCATGGTCGGAGCTACTGCTAGCGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGGCTCCCGGCGGGATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTATGCTCAGCCGCCGTCCCAGGCATGGCAATCCGTGTGGCAGACCGCTGCTGAGGACGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGTAATCTTGATGGTCAGAGCAATTCTTGTGTAGATGATCTGCTGTCTGGTGCAATGAAAACAAAACTGATGCGTTTTGCTGATCCTGTCCAGGGTGTAAAACGAAGT 747 53.82 MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQSNSCVDDLLSGAMKTKLMRFADPVQGVKRS 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31009024 31014684 - ClCG06G017930.1 Cla06g01745 275937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01745 249 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 2 220 - -
Cla06g01745 249 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677
Cla06g01745 249 MobiDBLite consensus disorder prediction 1 23 - -
Cla06g01745 249 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982
Cla06g01745 249 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982
Cla06g01745 249 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 2 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01745 - - - csv:101213576 360.147
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01745 Cla-Chr6:31009024 Cla09g01320 Cla-Chr9:20823609 1.80E-68 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g01745 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 9.3e-89 323.6
Cla09g01320 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.2e-53 206.1
Cla03g01621 . 114 282 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.4e-52 203.4
Cla03g01621 . 33 292 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 2.3e-55 212.6
Cla09g01320 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.2e-48 190.3
Cla06g01745 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.7e-43 171.0
Cla03g01621 . 55 282 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.0 2.4e-62 235.7
Cla09g01320 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.9e-52 202.2
Cla06g01745 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.9e-51 199.5
Cla06g01745 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.8e-38 155.2
Cla06g01745 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 7.7e-81 297.4
Cla09g01320 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.0e-49 193.0
Cla03g01621 . 114 282 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 5.9e-49 191.4
Cla09g01320 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.8e-65 245.4
Cla03g01621 . 86 250 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 3.3e-50 195.3
Cla06g01745 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.3e-50 194.9
Cla08g01010 . 35 169 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.5 9.3e-38 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61348 PF00808 CBFD_NFYB_HMF 2.80E-17 CL0012 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01745 Cla_Chr06 FPKM 45.330158 44.697392 58.216316 57.989479 25.242188 24.52648 31.897898 39.427406 43.753811 46.485905