Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01745 ATGGACACCAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTCCCGGCCCCTCCCTTCCACCACCTCCTTCAGCAGCAGCAGCAACAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTCTCGCCCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAGGCCCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATTACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGCATGGTCGGAGCTACTGCTAGCGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGGCTCCCGGCGGGATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTATGCTCAGCCGCCGTCCCAGGCATGGCAATCCGTGTGGCAGACCGCTGCTGAGGACGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGTAATCTTGATGGTCAGAGCAATTCTTGTGTAGATGATCTGCTGTCTGGTGCAATGAAAACAAAACTGATGCGTTTTGCTGATCCTGTCCAGGGTGTAAAACGAAGT 747 53.82 MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQSNSCVDDLLSGAMKTKLMRFADPVQGVKRS 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31009024 31014684 - ClCG06G017930.1 Cla06g01745 275937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01745 249 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 2 220 - -
Cla06g01745 249 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677
Cla06g01745 249 MobiDBLite consensus disorder prediction 1 23 - -
Cla06g01745 249 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982
Cla06g01745 249 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982
Cla06g01745 249 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 2 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01745 Cla-Chr6:31009024 Cla09g01320 Cla-Chr9:20823609 1.80E-68 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61348 PF00808 CBFD_NFYB_HMF 2.80E-17 CL0012 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01745 - - csv:101213576 360.147