Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01748 ATGAGTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTTTGCCCGCGCAGTAGCAACACAGGAGCATCTGTTTTTTCTTCTGGAAACATACAAATGGAAGAGAAACCCACTAATGTTTTGGCTCTTGCCCAGACAACTCAAGAGCTTGCAATGGACGGCATCAAGCATCTCGAGGAAACCATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTACAACGGCAACGACGGCTACTTCTGGTTTAACAATTGCCAGCCCTAATGGTCCATCTTCGCATTCCGCTAATGGAGTTGTAAACGGCGACGCAAGTTCCGAAAGCACTAGCCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCTGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAAATTACTGACTGATCTTCCAATTCTCTATCCAAGTTCATTAGCCAGTGTTTCTCATTTCGAATTTGCTTTTTATTTGGAAAGAATCGAGATCGATTCGGAGATATTGGGTTCCCCCAGAGACTACAATGAACCTGGTTCTCATGCAGAAGCATATGAATCGGGCACGAGTGGTCATGCATCGCCTGCAGATCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAGGGAACTTGTGATGAAGAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTCTGA 852 46.01 MSRYVRVVKETDLKSVGLCPRSSNTGASVFSSGNIQMEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31028503 31030238 + ClCG06G017970.2 Cla06g01748 275940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01748 283 Coils Coil 239 259 - -
Cla06g01748 283 MobiDBLite consensus disorder prediction 98 139 - -
Cla06g01748 283 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 44 172 IPR034568 GO:0016592
Cla06g01748 283 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 220 283 IPR034568 GO:0016592
Cla06g01748 283 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 44 172 - -
Cla06g01748 283 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 220 283 - -
Cla06g01748 283 MobiDBLite consensus disorder prediction 208 236 - -
Cla06g01748 283 MobiDBLite consensus disorder prediction 98 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01748 - - - csv:101213095 306.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g90 . . Bda06g00723 . . . . . . . . . . . . . . . . . . . . . Cla06g01748 Cam06g1939 Cec06g1988 Cco06g1992 Clacu06g1895 Cmu06g1836 Cre06g2650 . . Cone13ag0229 . . . . . . Blo15g00203 . . Bpe07g00894 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011204 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01748 Cla_Chr06 FPKM 121.726532 127.74337 30.228323 26.31056 25.709864 25.895973 22.882217 5.051358 4.879876 5.713318