Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01758 ATGGAAACCTCACAGCGGGAAACGAGTTATAGACGAGTTCCAGACGAACCAGAGCTCGATCTATACACCATTCCAAGTCACTCCAGTTGGTTTTCGTGGGACGAAATTCACGAAACGGAGAAATTAGCTTTGAAGGAGTTTTTTGATGGAAGCTCAATATCAAGAACGCCGCGCATATATAAAGAATATAGAGATTTTATTATCAATAAGTACAGGGAAGAGCCTTCCAGCAGGCTTACGTTCACCGAAATTCGGAAGTCTCTGGTGGGAGATGTTAATTTGCTTCATAAGGTGTTTATTTTCTTGGAGACATGGGGGCTGATCAACTTTGGCGCAACTTCGGATGACAATGATTTGACGGAGGTGGAAGATGGAGAGAGTTCTATAATTAAGATTGAAGAGGGGGTTCCCAATGGGATTCGTGTGGGAGCAACGCCAAATTCGGTCAAGCCAATTTCAGCACCACCTGCTGTGGAAGACGGTGCTATTGTTAATGGGAGCGGGTTTAAATTGCCCCCTTTGACTTCTTATTCAGATGTTTTCAGTGACTTGTTGAAACAGAAGATTTTAGCGTGTGGGAACTGTGGCCAGCATTGTGGATCTAGATACCATCAATGCGCCAAGGATGGTTATTTAATCTGCGAAAACTGTTTCAATGATGGAAATTATGGGGAGCAGAGGCTTTCAGAAGATTTTGAGTTGAAGACCAACGAGTTCGTTGAAGATGGTAGCAATACCGGAGCTGTGTGGACTGAGGCTGAAACTCTGCTTCTTTTGGAATCCGTTTTGAAGCATGGAGATGACTGGGAACTCGTTGCTCAAAATGTTCAAACCAAGACTAAATTGGATTGTATATTGAAGCTTGTAGAGTTGCCGTTTGGGGATTCCTTGTTATGCTCTGAAGCTCAAAGGAACGAGGTTAGTGGTTCCACTAACAACCTTACTAGTGAAAAGGAAATTACAGACGCTCCAACTAACAATCAGGAGATCGCCGGAAGTGAAGACCAAGGTACCAAGGACATAAATGAGGACAAAGATGAAGAGAACCAAGGTCCTCCCAAGCGACAATGCACCGCTTATGTTCAAGATACGAGCAGTTCTCTGATGAAACAGGTAGGATTTATGTATCATGTCTCGATACTTATCCCTTTCAAACTAATACATCTAACTGCATTGTATAGAAGCGAAGTAGCTTTGATATCAAGCATGGTTGGACCACATATTATGGGGGCAGCTGCTACTGCTTCTGTTACAGCACTTTGTGACGAAAACTTATATCCGAAAGAAATATTTGATGATCAAGATTTTTTTGTCCCTAATGGATTGTGTTCTGCGGCTTCCACCACAGCAAATCATGAGATTGAGAGGTGTCAATGCTTTGCTAGATCCGTTTCTTGTTTTATGGTTCAGCATTTTGGCCATTACTTTGCCTTGCCTTTAACCATCACTATCTTTACTTTCCCTTTAGGTGATGTAGTGGCGGAGGACAAAGGTGACATACCTTTAATCTTACGAGTTAGAGCTGCGATTGCAACAGCCCTTGGTGCTGCTGCAGCACGTTCAAAATTACTTGCTGATCAAGAAGAGAGAGAAATGGAATATTTATTGGCGATAATGATAGAAACACAGATGAAGAAGATGCATCGGAAAATTAAGCATTTTGAAGATCTCGAGCTGATTATGGAAACAGAATGTCCTGTGATTGAGGAACTAGAAGATAAACTGTTAATGGAGCGGGTTAGTGTCTTGCAATCTGCATTTGATCTTGGTATATCTAGGTGGAAGGATTATCCTTCTGTGAGATCTTGA 1809 42.12 METSQRETSYRRVPDEPELDLYTIPSHSSWFSWDEIHETEKLALKEFFDGSSISRTPRIYKEYRDFIINKYREEPSSRLTFTEIRKSLVGDVNLLHKVFIFLETWGLINFGATSDDNDLTEVEDGESSIIKIEEGVPNGIRVGATPNSVKPISAPPAVEDGAIVNGSGFKLPPLTSYSDVFSDLLKQKILACGNCGQHCGSRYHQCAKDGYLICENCFNDGNYGEQRLSEDFELKTNEFVEDGSNTGAVWTEAETLLLLESVLKHGDDWELVAQNVQTKTKLDCILKLVELPFGDSLLCSEAQRNEVSGSTNNLTSEKEITDAPTNNQEIAGSEDQGTKDINEDKDEENQGPPKRQCTAYVQDTSSSLMKQVGFMYHVSILIPFKLIHLTALYRSEVALISSMVGPHIMGAAATASVTALCDENLYPKEIFDDQDFFVPNGLCSAASTTANHEIERCQCFARSVSCFMVQHFGHYFALPLTITIFTFPLGDVVAEDKGDIPLILRVRAAIATALGAAAARSKLLADQEEREMEYLLAIMIETQMKKMHRKIKHFEDLELIMETECPVIEELEDKLLMERVSVLQSAFDLGISRWKDYPSVRS 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31086206 31089242 - ClCG06G018080.2 Cla06g01758 275950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01758 602 ProSiteProfiles Myb-like domain profile. 250 284 IPR001005 -
Cla06g01758 602 SMART sant 246 294 IPR001005 -
Cla06g01758 602 Gene3D - 246 295 - -
Cla06g01758 602 SUPERFAMILY Homeodomain-like 246 292 IPR009057 -
Cla06g01758 602 MobiDBLite consensus disorder prediction 308 335 - -
Cla06g01758 602 Pfam Myb-like DNA-binding domain 250 288 IPR001005 -
Cla06g01758 602 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 21 600 - -
Cla06g01758 602 SUPERFAMILY Homeodomain-like 20 114 IPR009057 -
Cla06g01758 602 Pfam SWIRM-associated region 1 512 585 IPR032451 -
Cla06g01758 602 CDD SANT 250 287 IPR001005 -
Cla06g01758 602 Gene3D - 28 114 IPR036388 -
Cla06g01758 602 ProSiteProfiles SANT domain profile. 245 296 IPR017884 -
Cla06g01758 602 PANTHER SWI/SNF COMPLEX-RELATED 21 600 - -
Cla06g01758 602 Pfam SWIRM domain 25 110 IPR007526 GO:0005515
Cla06g01758 602 ProSiteProfiles SWIRM domain profile. 22 119 IPR007526 GO:0005515
Cla06g01758 602 MobiDBLite consensus disorder prediction 336 352 - -
Cla06g01758 602 MobiDBLite consensus disorder prediction 308 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01758 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101222310 921.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00530 Cla-Chr2:5458000 Cla06g01758 Cla-Chr6:31086206 2.09E-32 dispersed
Cla06g01758 Cla-Chr6:31086206 Cla11g01856 Cla-Chr11:32085865 4.10E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g72 . . . Bda15g00681 Bpe12g00472 . . . . . Cma10g00047 . Car10g00036 . Sed01g2393 . . Bhi02g00661 Tan09g2396 Cmetu07g1239 . . . . Cla06g01758 Cam06g1950 Cec06g1999 Cco06g2005 Clacu06g1907 Cmu06g1847 Cre06g2661 . . . Cone19ag0221 . . . . . . . . . . . Bma08g00266 . Cmo10g00042 . . . . . . Cpe18g00918 . . . . . . . . . . . . . . Lsi06g01656 Csa01g00039 Chy02g02680 Cme02g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009523 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01758 Cla_Chr06 FPKM 29.291176 35.106937 34.244469 35.573368 36.257683 30.055609 40.470879 24.185139 30.57748 31.228588