Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01759 ATGGCGTCTGTCAACATAGAAGACAAGAAAGCAGAGGATGAAGCTCCTGTCGAGGAGAAAAACAAACTCCAAGGAAAGGAAGACAGTAAGGATGAAGATACTTCCCAAGCCCAGAAGTCGGGAAAAGAAGCGACTCACTTAGCTGACAAAGAAGAAGCTACTAGCGTAGAGGGCGGTACGGAAGAGGTAAATGGTGATGCTAAAGCTGAGGAGAGTAAGGAGGATGAGGAGCAGAAAGGTGACCCCGAAATTCAAGAAGTAGGTGAGGAACAGGGCACTGCTGCAAATGACGAACCTGAGGAAACAAATTCTGACAAGAAAGGGGAAGATAGCGCAGAGGAGGAAGATGAAGGTGACGACGAGGTTGAAACTGAAGGCGAAGGCGAAGACGAAGAAAGCGAGGTACCTAAGAACGAATCAAAGGCAGATGCAAAGAAGGATGGAAAGGTGTCTGCGAAATCAAGAAAAAATTCTGCAGAAAAGAAAGGAAAAAAAGATTCTAGTTTGAAGGAGCCAGTCACGCCAACCACTGAGAGGCCAGCGAGGGAGAGAAAGACAGTTGAGAGGTATTCCGTCCCATCGCCAGGCAGGTTGGGAAGGTCTTCTGCAAGCAAAGCTCTCTCAATTGAAAAGGGCCGCGGCACTACGCTCAAGGATATTCCAAATGTGAAAACTATTTCAGTGGCTTTCAAATTGTCAAAGAGAAAAGCCGATGACAATCTGCAACTACTTCATACAATTCTGTTTGGAAAGAAAGCAAAGGCTCAAACCTTGAAAAGAAATATAAGCCAGTTTTCGGGTTATGTTTGGGTTGAGAATGAGGAAAAACAAAGGTTGAAGGTAAAGGAGAAGCTTGACAAGTGTGTCAAAGAAAAATTGGTGGATTTTTGTGATGTGCTAAATATCCCAATAAATAAAGCCAGTGAGGAGCTCTCAGCAAAGTTATTAGAATTTTTGGAGTCACCACATGCTACAACTGATGTTTTGCTGGCTGACAAGGAGCAGAAAGCCAAAAAGCGACGGAGGGCTAGTTCAGGCAAGACAGTTGGTTCTGGAGAATCTGCAGAAGTGCCTGCTAAGAAACAAAAATCTCAGCCTACGAAGAAGAGGAAACATACATCGGATGTTGAGGAAGAAGAAGAGGATGATAAAGTTGAAACCTCAAACGAGAAGGATGGTTCTCACGATAAGGAAGATGATGACGAGGATGCAACTGCCTCAAAAGAAGAAATTGATGAAAAAGATAAATCAGATGAGGATGATAAGACACCAGAGAAAGTGCCTAGTCCAAAGAAGTCATCTAAGAAGGCTGGAAAAGATGATTCTGGGTCTAAATCTGTTGAAAAATCTTCTTCTACAAAGAAAGCGGCTGTAAAATCTTCTAAAGAAGCTGCAAAATCAACAAAAAAATCACCTAATTTGACTTCAAACAAGGATGCTGTCAAATCTGCTGCCTCACCATCAAAGCCAAAGGGCACTTCAAAAAAGCAAAAAGTTGAGGAAAAGAAGCCTGTAAAGGAAAAATCTTCGGGCAAAAAACAAACAAGCAAAGCCCCTGCAAAGATTTTGGTTGAAGAACAAGGCAAGGGAAAAAGTAGCAAGAAAGTTAAGAAAGAACCGAGCAGAGAGGAAATGCATGAAGTTGTAGTGAATATTCTGAAGCAAGTTGATTTCAATACTGCAACTTTGTCTGACATTCTCAGGCAACTTGGTACCCACTTTGGCGTGGATTTAATGCATAGGAAAGCAGAGGTGAAGGATATTATCACAGATGTGATAAATAACATGAGTGATGAAGAAGAGGAAGCTGATGATGATGGTGGTGATGATACGGACAAAGATGAGGACAAGGATGAGGATGCTTAA 1866 42.34 MASVNIEDKKAEDEAPVEEKNKLQGKEDSKDEDTSQAQKSGKEATHLADKEEATSVEGGTEEVNGDAKAEESKEDEEQKGDPEIQEVGEEQGTAANDEPEETNSDKKGEDSAEEEDEGDDEVETEGEGEDEESEVPKNESKADAKKDGKVSAKSRKNSAEKKGKKDSSLKEPVTPTTERPARERKTVERYSVPSPGRLGRSSASKALSIEKGRGTTLKDIPNVKTISVAFKLSKRKADDNLQLLHTILFGKKAKAQTLKRNISQFSGYVWVENEEKQRLKVKEKLDKCVKEKLVDFCDVLNIPINKASEELSAKLLEFLESPHATTDVLLADKEQKAKKRRRASSGKTVGSGESAEVPAKKQKSQPTKKRKHTSDVEEEEEDDKVETSNEKDGSHDKEDDDEDATASKEEIDEKDKSDEDDKTPEKVPSPKKSSKKAGKDDSGSKSVEKSSSTKKAAVKSSKEAAKSTKKSPNLTSNKDAVKSAASPSKPKGTSKKQKVEEKKPVKEKSSGKKQTSKAPAKILVEEQGKGKSSKKVKKEPSREEMHEVVVNILKQVDFNTATLSDILRQLGTHFGVDLMHRKAEVKDIITDVINNMSDEEEEADDDGGDDTDKDEDKDEDA 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31093028 31098664 + ClCG06G018090.1 Cla06g01759 275951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01759 621 MobiDBLite consensus disorder prediction 332 544 - -
Cla06g01759 621 PANTHER OS01G0924900 PROTEIN 98 619 - -
Cla06g01759 621 MobiDBLite consensus disorder prediction 387 402 - -
Cla06g01759 621 Pfam DEK C terminal domain 540 592 IPR014876 -
Cla06g01759 621 Gene3D - 532 595 - -
Cla06g01759 621 Coils Coil 271 291 - -
Cla06g01759 621 MobiDBLite consensus disorder prediction 527 544 - -
Cla06g01759 621 MobiDBLite consensus disorder prediction 110 133 - -
Cla06g01759 621 MobiDBLite consensus disorder prediction 594 621 - -
Cla06g01759 621 MobiDBLite consensus disorder prediction 1 210 - -
Cla06g01759 621 MobiDBLite consensus disorder prediction 493 514 - -
Cla06g01759 621 MobiDBLite consensus disorder prediction 409 448 - -
Cla06g01759 621 MobiDBLite consensus disorder prediction 467 492 - -
Cla06g01759 621 PANTHER DEK PROTEIN 98 619 IPR044198 GO:0003677|GO:0006325
Cla06g01759 621 MobiDBLite consensus disorder prediction 1 86 - -
Cla06g01759 621 SUPERFAMILY DEK C-terminal domain 533 594 - -
Cla06g01759 621 MobiDBLite consensus disorder prediction 134 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01759 K17046 DEK; protein DEK - csv:101211154 749.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01759 Cla-Chr6:31093028 Cla10g00403 Cla-Chr10:5471411 3.35E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g70 . . Bda06g00718 Bda15g00682 Bpe12g00471 . . Bma12g01088 . . Cma10g00046 Cma11g00021 Car10g00035 Car11g00020 Sed12g2525 . Cpe04g01627 Bhi02g00660 Tan09g2398 Cmetu02g1444 . Hepe09g0033 . . Cla06g01759 Cam06g1951 Cec06g2000 Cco06g2006 Clacu06g1908 Cmu06g1848 Cre06g2662 . . Cone13ag0236 Cone19ag0222 . . . . . Blo15g00199 . . Bpe07g00898 . . Bma08g00267 . Cmo10g00041 Cmo11g00021 . . . . . Cpe18g00919 . . . . . . . . . . . . . . Lsi06g01657 Csa01g00038 Chy02g02681 Cme02g02085
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009134 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01759 Cla_Chr06 FPKM 212.51149 220.342682 325.089447 315.794312 164.028198 173.200958 159.78772 317.190582 317.278168 319.917206