Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01760 ATGGCTGGCTGTGGCAAAAGGAGTTCTCAACTCAACGTTCACCAGCATGAACCCACTCTGATCACTCCCGCAGAGGAAACGCCAAAGGGTCTCTACTTCCTCTCAAACCTTGACCAGAACATTGCAGTCATCGTCCGTACCATTTACTCCTTCAAATCAGAGTCCAGAGGCAATGAAGACGCAGCCCAAGTCATTAAAAATGCTCTTTCCAAAGTGCTTGTCCATTACCATCCCCTTGCTGGGCGCCTCACTCTCAGCTCCGACAAGAAGCTCATTGTGGATTGTACGGCCGAGGGTGCTGTCTTTGTGGAAGCTGAAGCTGACTGTTCCATTGAAGACATTGGAGATATAACCAAGCCTGATCCCGATACTCTTGGCAAGCTCGTTTATGACATTCCTGGTGCTACCAACATTCTTCAGATGCCTCCTCTTGTAGCCCAGGTGACTAAGTTCAAATGTGGTGGATTCGTTGTGGGGTTGTGTATGAATCATTGTATGTTTGATGGGATTGGGGCAATGGAATTTGTGAATTCGTGGGGTGAAACGGCAAGGGGTTTGCCTTTGGCTGTTCCGCCGTTTCTAGATAGAAAAATTCTGAAAGCAAGAGAGCCGCCGGTGTTTGAGTTTCCTCACCGGGAATTTGCTGAGATAGAAGATGTATCCAACACTTGTAAGCTTTATGGAGATGAGGAGATGCATTATCGGTCCTTCTGCTTTGAACCGGAGAAACTGAATAAGCTCAAACAGAGAGCGTTGGAAGATGGGGCTTTGAAGAAATGCACAACGTTTGAAGCCCTATCGGGATTTGTGTGGAGGGCAAGAACAGAGGCTCTACGAATGCAGCCAGATCAACAAACAAAGCTTCTCTTCGCCGTCGACGGGCGATCTAGGTTTCAGCCCCCAATACCGAAAGGGTACTTTGGAAACGCCATCGTTTTAACCAACTCGCTATGCAGCGCCGGCGAGCTTCTGGAAAATCCACTGTCGTATGGGGTGGGGCTGGTTCAGAAGGCGGTGGAGATGATCACGGACAGCTACATGAGGTCGGCCATCGATTTCTTTGAAGCGACGAGATTAAGGCCTTCTCTGGCGGCGACTCTGTTGATCACAACTTGGTCGAGGCTAGGATTCCACACGACGGACTTCGGGTGGGGGGAGCCGGTGTTTTCAGGGCCGGTGGCGTTGCCGGAAAAAGAGTTCACCGTCACCGTCGTTTTCCTCCGCCGAAACCTCTGTTCAAAACTGATACATCCGTGTCTGAGAGCGAAGGCATCGGCCTTTTGTCTTACTTGGCACGCACCCATGGAAACTAGTGTTAAGCAGGAACTTATTGAACCTTTACGCGCGCAAGGAACGAGCAACAATCCCGAGGCATCAAATGTGTGTCTCTCGTTTATTGAGCTCAGTAGTGACAGCGAGTCGGATTCGGAAGATTCGGAGCAAGAAGTAGTTGACGGAATTTTGGGCGAAGGTACGCGAAGCATCGGGCTCCCAAACGGCGTCGATGGAGGGTTCTCGAAGAAGCGGAGGCTGAACGAGTTGGAAGTTGTTAAACCTCTAGGTTTTCTTCCGCCCGCGGCGCTGGACGAGAAGAATTCCATGGCGGTTATTTTGCCCTCGTCAGCAGAGGCGTGTACTGGACAAGAGATGAGGACTTCGAACGCAAATGGTTCAGCCTGCAAACAGTTTTGGAAGGCAGGAGATTATGAAGGAGCTCCTTGCAGTAATTGGGATTCATCATCGGGTGGCATGGACCACGTTAGGGTTCACCCTAAGTTTCTGCATTCTAATGCTACCAGTCATAAGTGGGCTCTGGGAGCTTTTGCCGAGTTATTGGACAACTCGTTAGATGAGGTTTCCAACGGAGCTACTCATGTTAATATAGACATGCTTGTGAATAAGAAAGACGGGACCAAAATGTTATTAGTTGAAGATAATGGTGGTGGGATGAGCCCTGACAAAATGCGTCACTGCATGTCATTGGGTTATTCAGAGAAAACCAAATTAGCAAACACCATTGGACAATATGGTAATGGTTTTAAGACCAGTACCATGAGACTTGGAGCAGATGTAATTGTATTCTCACGTTGTGGTGGACAATATGGGAAAAGTGGCACACAGAGCATTGGATTACTATCCTATACATTTTTGAGAAGCACTGGAAAGGAGGATATCGTAGTTCCAATGCTTGACTATGAAAGGAAGGGAGGTGAATGGGCGAAGATAGTGCGATCTTCTCTTAGTGATTGGAACAAAAATGTGGAAACAATCGTTCAATGGTCTCCGTTTTCTAATGAAGCTGAACTTCTCCGTCAGTTTTATTTGATGAAAGATCATGGAACCCGCATTATAATATATAACCTCTGGGAAGACGACCAGGGGCAGTTGGAGCTGGATTTTGATACTGACCAACATGATATCCAAATCAGAGGCGTCAACAGAGATGAGAAAAGTATACAAATGGCAAAAAAATTTCCCAACTCTCGGCACTTCTTGACTTATCGGCATTCTTTGAGGAGTTATGCATCCATTCTTTATTTGAGGCTCCCTCCTGGCTTTCGCATCATTCTTCGTGGGAGAGATGTAGAACACCATAACATTGTGAATGATATGATGATGTCTCAAGAGGTCACGTACAGACCTCAGCCAGCGATGCTAACTGCTTGCAGATGTTGTTATCAGATGGTTGCTGTTGTGACCATTGGGTTTGTGAAGGATGCAAAGCATCATATAGATGTTCAAGGATTCAATGTTTATCATAAGAATCGGCTCATCAAGCCGTTTTGGAGGCTTTGGAATGCTTCGGGAAGTGATGGTCGTGGAGTTATAGGTGTTCTAGAAGCAAATTTTGTTGAACCTGCCCACGATAAGCAGGGGTTTGAGCGAACAACTGTTCTTGCAAGACTTGAAGCACGGTTGATACAGATGCAGAAGACTTACTGGGGTTCCTACTGTCATAAGATTGGCTATGCTCCAAGACGAATTAATAAACCTGCCAATCCATCTCCGGATAGAGAAAGTTCCCCGGATGATTATTCTTCCCAGGCTTCACCTCAATCAAAAAAGAAGTTTACTACATTAAGTGGGAAGAAACCTGATAAAGTCTATTCAGGCAAAGAATCAGAGAAGTTTCAGAAAACAAAGGACTTTAGATATGGGAATGTGCATTCAAGTAAAGACAAAAACAATAGTATGACCCCTGACCCTGAGAAATCGGGGATCAGACCATGTTCCTCTGAGCCACCTTCACCTTCTGGACTAGAAGTTAGGGTTGATAATCCGCATGGAGGACAAGCAAACGGTACTGGCAATGAGACATTTCAGGGAAATGATGTTTCAATGACAATGAACGCGTCTTCAAATGGAGGTGTCAGTAAAGCTCAGCAAGGTGGATTGGGTAGCAGAGGACCCCAATTGAAGATTAGAGTTGTTAGATTGGATGTGTATACACCGTATCAAAGTTTCATGTGCTCATTCTTGCTGTTTTTGTCCCTGCTTTGTGGAGGAGATGTAAACGATAGCGAGCATTCCCTTTCAAGTTCCGATTTCCACATGCTACAGCAGTTGAAGGAAGAAAATAAAGAATTGAAGGAGAGGTGTGTGTTCTTTCTTCTGCTTACAGTAATTGAGCAGCGTCTATACACCACTGAATGTAATGCTTCATGCCTATCCCTTTCTAGATTACAGAGAAAGGAAGCTGATCACGACAAATTGCAGCATGAAAGAGAGAGGTGCAAATCACTTGAGGCTCAGCTTAAAGCAGCAGAGCTTAAAATTGAGGAATTGAATAAAGAACAAGAAAGCCTAATAGATATTTTCTCTGAAGAGAGAGATCGAAGAGAAACCGAGGAGCGAAATCTGCGAAAAAAGCTTCAGGGTAGTAAAAGTAGATTTAGGAATGGCGCATACGGTGTTCCTGCAAGGTAG 3927 45.76 MAGCGKRSSQLNVHQHEPTLITPAEETPKGLYFLSNLDQNIAVIVRTIYSFKSESRGNEDAAQVIKNALSKVLVHYHPLAGRLTLSSDKKLIVDCTAEGAVFVEAEADCSIEDIGDITKPDPDTLGKLVYDIPGATNILQMPPLVAQVTKFKCGGFVVGLCMNHCMFDGIGAMEFVNSWGETARGLPLAVPPFLDRKILKAREPPVFEFPHREFAEIEDVSNTCKLYGDEEMHYRSFCFEPEKLNKLKQRALEDGALKKCTTFEALSGFVWRARTEALRMQPDQQTKLLFAVDGRSRFQPPIPKGYFGNAIVLTNSLCSAGELLENPLSYGVGLVQKAVEMITDSYMRSAIDFFEATRLRPSLAATLLITTWSRLGFHTTDFGWGEPVFSGPVALPEKEFTVTVVFLRRNLCSKLIHPCLRAKASAFCLTWHAPMETSVKQELIEPLRAQGTSNNPEASNVCLSFIELSSDSESDSEDSEQEVVDGILGEGTRSIGLPNGVDGGFSKKRRLNELEVVKPLGFLPPAALDEKNSMAVILPSSAEACTGQEMRTSNANGSACKQFWKAGDYEGAPCSNWDSSSGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVSNGATHVNIDMLVNKKDGTKMLLVEDNGGGMSPDKMRHCMSLGYSEKTKLANTIGQYGNGFKTSTMRLGADVIVFSRCGGQYGKSGTQSIGLLSYTFLRSTGKEDIVVPMLDYERKGGEWAKIVRSSLSDWNKNVETIVQWSPFSNEAELLRQFYLMKDHGTRIIIYNLWEDDQGQLELDFDTDQHDIQIRGVNRDEKSIQMAKKFPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGRDVEHHNIVNDMMMSQEVTYRPQPAMLTACRCCYQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKTYWGSYCHKIGYAPRRINKPANPSPDRESSPDDYSSQASPQSKKKFTTLSGKKPDKVYSGKESEKFQKTKDFRYGNVHSSKDKNNSMTPDPEKSGIRPCSSEPPSPSGLEVRVDNPHGGQANGTGNETFQGNDVSMTMNASSNGGVSKAQQGGLGSRGPQLKIRVVRLDVYTPYQSFMCSFLLFLSLLCGGDVNDSEHSLSSSDFHMLQQLKEENKELKERCVFFLLLTVIEQRLYTTECNASCLSLSRLQRKEADHDKLQHERERCKSLEAQLKAAELKIEELNKEQESLIDIFSEERDRRETEERNLRKKLQGSKSRFRNGAYGVPAR 1308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31102657 31121647 + ClCG06G018100.2 Cla06g01760 275952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01760 1308 Gene3D - 591 806 IPR036890 -
Cla06g01760 1308 Coils Coil 1186 1206 - -
Cla06g01760 1308 MobiDBLite consensus disorder prediction 1097 1132 - -
Cla06g01760 1308 Pfam Transferase family 13 401 - -
Cla06g01760 1308 Pfam Morc6 ribosomal protein S5 domain 2-like 836 981 IPR041006 -
Cla06g01760 1308 MobiDBLite consensus disorder prediction 1026 1056 - -
Cla06g01760 1308 Coils Coil 1228 1279 - -
Cla06g01760 1308 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 606 724 - -
Cla06g01760 1308 PANTHER PROTEIN MICRORCHIDIA 7 435 1298 - -
Cla06g01760 1308 Gene3D - 224 414 IPR023213 -
Cla06g01760 1308 Gene3D - 7 216 IPR023213 -
Cla06g01760 1308 MobiDBLite consensus disorder prediction 1001 1025 - -
Cla06g01760 1308 MobiDBLite consensus disorder prediction 1275 1308 - -
Cla06g01760 1308 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 606 808 IPR036890 -
Cla06g01760 1308 MobiDBLite consensus disorder prediction 1275 1291 - -
Cla06g01760 1308 MobiDBLite consensus disorder prediction 993 1135 - -
Cla06g01760 1308 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 435 1298 IPR045261 GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01760 - - - csv:101222073 1328.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00775 Cla-Chr2:9775669 Cla06g01760 Cla-Chr6:31102657 7.41E-74 dispersed
Cla02g00776 Cla-Chr2:9805922 Cla06g01760 Cla-Chr6:31102657 5.92E-64 dispersed
Cla05g01694 Cla-Chr5:28684898 Cla06g01760 Cla-Chr6:31102657 1.80E-40 dispersed
Cla06g01031 Cla-Chr6:22295844 Cla06g01760 Cla-Chr6:31102657 3.45E-66 dispersed
Cla06g01670 Cla-Chr6:30287083 Cla06g01760 Cla-Chr6:31102657 2.04E-134 dispersed
Cla06g01760 Cla-Chr6:31102657 Cla07g01453 Cla-Chr7:31808576 0 dispersed
Cla08g01464 Cla-Chr8:27556339 Cla06g01760 Cla-Chr6:31102657 3.87E-59 dispersed
Cla11g00868 Cla-Chr11:13753101 Cla06g01760 Cla-Chr6:31102657 9.41E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g69 . . . . . . . . . . . Cma11g00020 . Car11g00019 . . Cpe04g01628 Bhi02g00471 . . . Hepe09g0031 . . Cla06g01760 Cam06g1953 Cec06g2003 Cco06g2008 Clacu06g1911 Cmu06g1851 Cre06g2664 . . Cone13ag0239 . . . . . . . . Bda14g01346 . Bpe15g00232 Bma03g01239 . . . Cmo11g00020 . . . . . . . . . . . . . . . . . . . . Lsi06g01658 Csa01g00034 . Cme02g02086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002795 1 2 1 1 1 2 1 2 2 2 2 2 1 2 3 1 2 1 1 2 2 1 2 3 2 1 2 4 3 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01760 Cla_Chr06 FPKM 6.793743 7.011415 4.505017 3.576923 7.260434 6.657928 5.790303 9.455927 8.189758 9.190833