Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01771 GGAACGCATAATTCTGTGAGACAGAAAAGAAGGGAGAGAGTGAAAGCGAAAGGAGGCCAGGCAATCGCCTTTTCGCTTCTCCAATCTCCAACCTTGCAATTTTCTTTTCAATTCGTATTCAAACTATTAGGGTTCCTTCTCTCCTTCTCATTTATCGATCACTCAGTGACGAAGATGATAGACTTCGCTCGCGTGCAGAAGGAGCTCCAAGAATGCACTAAAGACATTGAGGCTTCTGGTATTAGAGTCACCCCCAAGTCCGATAGTCTTTCCCATTTGCTCGGCATCATTCCTGGTCCTATTGCTACTCCTTACGAAGGTGGCACCTTCCAAATTGACATCACATTGCCAGATGGGTATCCATTTGAGCCCCCCAAAATGCAGTTTGCTACAAAAGTCTGGCACCCTAATATCAGTAGTCAAAGTGGTGCAATTTGCCTGGACATTTTGAAGGATCAGTGGAGTCCAGCACTTACGCTGAAGACAGCCCTGCTTTCTGTGCAGGCATTGCTATCTGCTCCTCAACCTGATGATCCTCAAGATGCTGTCGTGGCACAACAGTATCTTAGAGACTACCAGACTTTTGCTGGCACAGCTCGATATTGGACAGAAACTTTTGCCAAGACGTCTTCTCTTGGGGTGGAAGAAAAGGTTCAGAAACTTGTGGAGATGGGATTCCCGGAGGCTCAAGTAAGGAGCAGTTTGGAAGCTGTGGGTTGGGATGAAAATTTGGCTTTGGAAAAGCTCTGCTCCGGCTAA 759 46.77 GTHNSVRQKRRERVKAKGGQAIAFSLLQSPTLQFSFQFVFKLLGFLLSFSFIDHSVTKMIDFARVQKELQECTKDIEASGIRVTPKSDSLSHLLGIIPGPIATPYEGGTFQIDITLPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLRDYQTFAGTARYWTETFAKTSSLGVEEKVQKLVEMGFPEAQVRSSLEAVGWDENLALEKLCSG 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31179575 31182147 - ClCG06G018200.1 Cla06g01771 275963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01771 252 CDD UBCc 64 203 IPR000608 -
Cla06g01771 252 Pfam Ubiquitin-conjugating enzyme 64 202 IPR000608 -
Cla06g01771 252 SMART ubc_7 63 208 - -
Cla06g01771 252 Pfam UBA/TS-N domain 215 248 IPR015940 -
Cla06g01771 252 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 134 150 IPR023313 -
Cla06g01771 252 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 213 252 IPR015940 -
Cla06g01771 252 SMART uba_6 214 251 IPR015940 -
Cla06g01771 252 CDD UBA_II_E2_UBC27_like 215 250 IPR041974 -
Cla06g01771 252 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 61 245 - -
Cla06g01771 252 SUPERFAMILY UBA-like 214 252 IPR009060 GO:0005515
Cla06g01771 252 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 60 208 IPR000608 -
Cla06g01771 252 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 61 245 - -
Cla06g01771 252 SUPERFAMILY UBC-like 62 209 IPR016135 -
Cla06g01771 252 Gene3D - 207 252 - -
Cla06g01771 252 Gene3D Ubiquitin Conjugating Enzyme 59 206 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01771 K04649 HIP2, UBC1; ubiquitin-conjugating enzyme (huntingtin interacting protein 2) [EC:2.3.2.23] - csv:101209270 386.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01771 Cla-Chr6:31179575 Cla02g01856 Cla-Chr2:33705634 5.71E-36 dispersed
Cla06g01771 Cla-Chr6:31179575 Cla01g00064 Cla-Chr1:542564 1.57E-39 transposed
Cla06g01771 Cla-Chr6:31179575 Cla01g00205 Cla-Chr1:2033852 1.28E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g46 . . . Bda15g00687 Bpe12g00466 . . . . . Cma10g00034 . Car10g00024 . Sed12g2540 . . Bhi02g00643 Tan09g2420 Cmetu02g0270 . . . . Cla06g01771 Cam06g1963 Cec06g2014 Cco06g2021 Clacu06g1921 Cmu06g1862 Cre06g2675 . . Cone13ag0249 Cone19ag0229 . . . . . Blo15g00101 . . . . . Bma08g00271 . Cmo10g00030 . . . . . . . . . . . . . . . . . . . . . Lsi06g01668 Csa01g00023 Chy02g02690 Cme02g02097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009524 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 4 1 1 1 0 1 1 2 1 33