Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01775 ATGGATAATACCCAAATCCTGGCCTCTGATCTTGACTCCCTAGTGCTCTCAAAAATGAATAACAATGCAGCATGTAGTTGGGAATTAGAAGAAAGCCCAGAAAGCTCCCACTATCAGTATCACTATCACTATCACCACCTTCTTCCACCTCAAACCCAATCTGTTTATACTAATAATAAGACTGCTACCACTGACTCCCCAAACAATTCCTCAAATGATCATCAAATATATATGCATTCTTCCCACTCCCAGTCCCACCCAAATGGAAGTGGAAGTGGAAGTGGGGGCGACCGCAAGAGGAGATGCGCAAAAGCAGCAGCAGGATCAGGCTGCAAGAAGCTCAAAACCCAACGCCATCATCCCCCTGCTCACCATGGCGGTTACATCCATGTGAGAGCAAGGAGAGGACAGGCCACGGACAGTCACAGCCTTGCAGAGAGGGTCAGAAGACAGAAAATCAGCCAAAGGATGAAGGTTTTGCAAACGCTTGTTCCAGGCTGCCACAAGGTAACTGGGAAGGCCCTAATGCTCGACGAAATTATTAACTATGTTCAGTCCCTGCAAAATCAAGTTGAGTTCCTGTCCATGAAGCTTGCTTCTGTTAACCCCACCCTCTACGACTTTGGAATGGATTATCCAGAAGTATTCCTCGGTACACCAGCCTCTGAGATATTATTGAATGGGAATGGCATGGTGTCACACTCAGATCAGCAGGCAGAATTGGCATATAATATGGCACCATACAACACATTTCAGGCCACAGGCGGCGGCGGTGGGGGTGGCGGTGGCAGCCCGATCTCAACGCCCGGAGACATCAACTTTATCAATCCATCTCCACTTTTCTTGGACCATGGGAATACTTCTCTGCTACATCTGTCATGA 882 47.85 MDNTQILASDLDSLVLSKMNNNAACSWELEESPESSHYQYHYHYHHLLPPQTQSVYTNNKTATTDSPNNSSNDHQIYMHSSHSQSHPNGSGSGSGGDRKRRCAKAAAGSGCKKLKTQRHHPPAHHGGYIHVRARRGQATDSHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPTLYDFGMDYPEVFLGTPASEILLNGNGMVSHSDQQAELAYNMAPYNTFQATGGGGGGGGGSPISTPGDINFINPSPLFLDHGNTSLLHLS 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31204841 31206645 - ClCG06G018250.2 Cla06g01775 275967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01775 293 CDD bHLH_AtBPE_like 127 211 - -
Cla06g01775 293 SMART finulus 143 193 IPR011598 GO:0046983
Cla06g01775 293 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 52 220 IPR024097 GO:0006355
Cla06g01775 293 MobiDBLite consensus disorder prediction 57 92 - -
Cla06g01775 293 Pfam Helix-loop-helix DNA-binding domain 141 188 IPR011598 GO:0046983
Cla06g01775 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 203 IPR036638 GO:0046983
Cla06g01775 293 MobiDBLite consensus disorder prediction 57 126 - -
Cla06g01775 293 PANTHER BHLH-TRANSCRIPTION FACTOR 52 220 - -
Cla06g01775 293 Gene3D - 134 206 IPR036638 GO:0046983
Cla06g01775 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 187 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla03g00376 Cla06g01775 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01775 Cla-Chr6:31204841 Cla09g00792 Cla-Chr9:8020731 4.76E-46 dispersed
Cla11g00412 Cla-Chr11:4667802 Cla06g01775 Cla-Chr6:31204841 3.47E-37 dispersed
Cla03g00376 Cla-Chr3:4364060 Cla06g01775 Cla-Chr6:31204841 2.86E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61351 PF00010 HLH 8.80E-07 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01775 - - csv:101208544 300.056