Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01782 GTCCCCACACTTGAAGTAGGTGAAATGAGAATGGTCCGCTTGTTTCTTGAAATCCAAAAAGATCCATATCAGAATTCTGTTAGGACGCTGTCAGAAACAGAAAGACCTGGCACCTTATCCAGAATAAACAGAAACCGAAAAGGTATCGCCTGCTCTGCTGCACCTTCTTCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGATGGGCAAGGCATGGCAATTGGCAATGGCATCCCCAACCACCAACTTTATTTGCTTTTGCTAATTTGTTTACTTTTCCCTTTTCCCTTTTCCAACAGGGAGAGAAAGCGAGGTCTGATACCATATACATACGCTTCGCTTCGCTTTACTTTTCTTTTCAAGACACTGTACAAACTACAGTACTACCATTCACTTCCACTCAACCTTTCCTTCTGTTATGGAAAAACACCATCCCCTTCATCATCAGGTGCCCCTTTTCTTCCCTCTCTCAACTCCTTTCATTCTCTTCCTCTGATCTCATCCCCTCTCTTTTATGTTATGCCGGAATACCAGGATATCAAGGACCTCGACTTGGATCTCGGACCCGACGAGCCTGATCTTGCCCCTCTCCCCCCCACCGTTACTTCCCGGGTACTGCACATGTTGGGAGACATCGCAGCAGGTCCCGCTTACAGGTTTTCCCAATGGCTTGAACTCGTCCGTAAACGTAGCGGCAAACATCGCGCTTCTGCCTTCCACAACCGCCCTCATCCACCTTTCGATATGCCTTTCGGCGCTGAGGAGCTTGTCAATGAATCAAGAACTCTTCCAGCTCCCGAGCAATCAACTGAAACGAATTTGTGGGATAGACTCGCTAAAGCTTCAATGTTGGATATCGAGTCGAGCTGTTTTTCGTGGGATAGGCTTTTGTCGCTTCACCGCACCGAACACAGTAGTAGCACCGAACATTCGGAAGATGAGATGAATAAAGCCCTTGAGGTCACTGTAAATTCTGGTGGAGTCGTTTTCTTTGCACTGTTCAATCAGCTTGGATATGATGATAACGTCCCAAAGGAAGCAGCTGCTGTGATAAAGATATCATCTTCAAGAATGGCCACGCAATCTGAACGCCTTGGTTATGAATTTGCTAAGTGGCTTGGGGTTCAAACTCCACAGGCTAGAGTTATTCATAATTCCAGCACGGAATGGCTCCAGATAAAAGAAGCTGCAGAGAAAGCACGAGATATTGCCTGTTTGGAGGGTGATGAGGTTGGTGAAATGACATGTTCTGAACTATTGGAAGCACTTGAATTTAGCAGATGCCTTTTTCTGATGAGCTATGTGCATGGATCTCCATTGTTGGAAAGTGCATTTGAATCACGAGAAATGGCTGAAAAATTAGCTGCTGCAATTGGAAGGATCTTCCTGTTGGACCTTGTCATTAGAAATGAAGATAGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCGGCAAATTTGCTCTTGGCTGATAGAATGACATCTGCAAATATGAATGCATTTGAGGAAGCCTTTGATTCTGCTATTATGCGATACAAACCAAAAGTCATTACAACGCTTCAAAAAGAAAGAAGGGCAACTTCAGTGGATAATAGATCGAGTTCTAATTCAGGGTTGGTTTCAGAGGTGTCTGAACTTTGTGATATTGTTGAATCCCCAAAATCTAGTAACCGAAGTATAAAAAGTCAAATATCAGATGAAGCATTGCCTTGTGATTTTAATATTGTGGCTATTGACTCTGGTGTTCCTCGTCGACCTCCTGCTGGAAAACGTGCTAATGATCAATCAATTTACCCAAAATTAGTCGAGTTGCTACTTAACAGTTCTGAGTTCTCCTCTAATCTGCTGCATGACATTACAGGAGGGAAATTAGGGTTCCCTTCATCAACTGATGCCAACTCAACTTGTGGCATGCAGCTTACAGATATGAGTTCTATTGTCCATGAATTTCGATATGGGTTTCGTGCTGCTCTTAGAGACTTGCAAGGATTTCACATATTTTTGCTTACCCTTCACCAAAAGTTAGACAACTCATTACGAGCGTTCATGAGTATCATAAATAAATTTCCCTTGGGGGAATCTGACAAAGAGGATGCAGGGATTCCTGAGTCCCATTTGCAGGGTTCTACCACTACTCATTGTTTATCTCCACGTGGTAAGGAACGAGCCTCTAGTGATGGTAATATAGATGTTACAGAGTCAGCTCTAAGATCATCATCGTCAGGAAACAAAGAAAGCTCAGACTTATCTTCTCCCTTGTCACGAGATAGCTCACAAGGAAAGCTATACAAAGGAAGTGCAGAGCCCATTCATAGCCTTCGTTTGACTGCAAAGCTTCGAGACTTTCATAAATTTGCCAAAGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAGTGCTAAAGAATGAAGCTGTTAAACTCTGCCAGGAGAATAAATTTAATACTGGGTTTTTTGAGGGCAGCGATAGTCATGGAGTTGTTGATGCTTATGAATTGAAGGTGAGACTTGAGCACATTCTTGAAAGGATTGCACTAATATCTGAGGCTGCAAATACAGAAAGGCCTTCTTCAGTTACACCTGCCTTGTTTATAGGCGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAGTTACTCATATTTTATGTCTCTGCTCAAATGAAATTGGGCAGTCAGATTCTCAGTTTCCTGATCTATTTGAATACAAAAATTTTTCAATAAGTGATGATGAAGACTCAAACATCAGCAGCATCTTTGAAGAAGCTTCTGATTTTGTTGATGACGTTGAAAGAAAGAGTGGGAAGGTCCTGGTTCATTGTTTTGAAGGGAAAAGCAGAAGTGCCACATTAGTTCTTGCTTACTTGATGCTCAGAAAGAAATACACACTGTTAAAAGCATGGAATGCCTTGAAACGGGTTCACCGGCGAGCTCAACCTAATGATGGGTTTGCCAAAACATTATTAGAGTTAGATCGAAGAATACATGGAAAGGTATCCATGGAGTGGCAATCACGAAAACCAACCATGAAAGTTTGCCCAATTTGTGGGAAAAATGCTGGACTGAGCAGTAGCTCACTGAAACTTCATTTGCAAAAATCACACAAGAAGCTATCATCTGGGAGTGTAGACAGCGCAATGACCATGGAAATACAGAAAGCATTGACAGCTCTGAGGATCAGTCGTGGAGGAAGCGTGAGCCCAACCCAAAGGCAATCTCTTCTCATCTTGGATGAATAG 3270 42.72 VPTLEVGEMRMVRLFLEIQKDPYQNSVRTLSETERPGTLSRINRNRKGIACSAAPSSSSSSSSSSSSSSSSDGQGMAIGNGIPNHQLYLLLLICLLFPFPFSNRERKRGLIPYTYASLRFTFLFKTLYKLQYYHSLPLNLSFCYGKTPSPSSSGAPFLPSLNSFHSLPLISSPLFYVMPEYQDIKDLDLDLGPDEPDLAPLPPTVTSRVLHMLGDIAAGPAYRFSQWLELVRKRSGKHRASAFHNRPHPPFDMPFGAEELVNESRTLPAPEQSTETNLWDRLAKASMLDIESSCFSWDRLLSLHRTEHSSSTEHSEDEMNKALEVTVNSGGVVFFALFNQLGYDDNVPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNSSTEWLQIKEAAEKARDIACLEGDEVGEMTCSELLEALEFSRCLFLMSYVHGSPLLESAFESREMAEKLAAAIGRIFLLDLVIRNEDRLPCRLLRWRGNSANLLLADRMTSANMNAFEEAFDSAIMRYKPKVITTLQKERRATSVDNRSSSNSGLVSEVSELCDIVESPKSSNRSIKSQISDEALPCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGFPSSTDANSTCGMQLTDMSSIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMSIINKFPLGESDKEDAGIPESHLQGSTTTHCLSPRGKERASSDGNIDVTESALRSSSSGNKESSDLSSPLSRDSSQGKLYKGSAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTPALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDSNISSIFEEASDFVDDVERKSGKVLVHCFEGKSRSATLVLAYLMLRKKYTLLKAWNALKRVHRRAQPNDGFAKTLLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALRISRGGSVSPTQRQSLLILDE 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31232675 31246516 + ClCG06G018320.1 Cla06g01782 275974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01782 1089 SMART dsp_5 862 1004 IPR020422 GO:0006470|GO:0008138
Cla06g01782 1089 Pfam Dual specificity phosphatase, catalytic domain 878 1003 IPR000340 GO:0008138|GO:0016311
Cla06g01782 1089 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 187 1088 IPR035010 GO:0004721|GO:0009737|GO:0043622
Cla06g01782 1089 Gene3D Protein tyrosine phosphatase superfamily 840 1008 IPR029021 -
Cla06g01782 1089 MobiDBLite consensus disorder prediction 701 769 - -
Cla06g01782 1089 MobiDBLite consensus disorder prediction 709 723 - -
Cla06g01782 1089 MobiDBLite consensus disorder prediction 50 75 - -
Cla06g01782 1089 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 862 1006 IPR029021 -
Cla06g01782 1089 ProSitePatterns Tyrosine specific protein phosphatases active site. 949 959 IPR016130 GO:0016311|GO:0016791
Cla06g01782 1089 Gene3D - 445 691 IPR036940 GO:0016301
Cla06g01782 1089 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 934 983 IPR000387 GO:0016311|GO:0016791
Cla06g01782 1089 SUPERFAMILY Protein kinase-like (PK-like) 226 600 IPR011009 -
Cla06g01782 1089 CDD DSP 863 1000 - -
Cla06g01782 1089 Pfam Actin-fragmin kinase, catalytic 275 559 IPR015275 -
Cla06g01782 1089 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 187 1088 - -
Cla06g01782 1089 MobiDBLite consensus disorder prediction 733 766 - -
Cla06g01782 1089 ProSiteProfiles Dual specificity protein phosphatase domain profile. 862 1007 IPR020422 GO:0006470|GO:0008138
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01782 K14165 K14165; atypical dual specificity phosphatase [EC:3.1.3.16 3.1.3.48] - csv:101220184 1623.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00547 Cla-Chr6:6643638 Cla06g01782 Cla-Chr6:31232675 1.14E-16 dispersed
Cla06g01782 Cla-Chr6:31232675 Cla07g00286 Cla-Chr7:3145477 1.48E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g32 . . . Bda15g00697 Bpe12g00460 . . . . . Cma10g00021 . Car10g00014 . Sed12g2546 . . Bhi02g00621 Tan09g2433 Cmetu02g0933 . Hepe09g0013 . . Cla06g01782 Cam06g1976 Cec06g2025 Cco06g2033 Clacu06g1933 Cmu06g1874 Cre06g2686 . . Cone13ag0255 . . . . . . . . . . . . Bma08g00279 . Cmo10g00018 . . . . . . Cpe18g00937 . . . . . . . . . . . . . . Lsi06g01680 Csa01g00011 Chy02g02701 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla09g00969 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.2e-122 435.3
Cla06g01782 . 188 1083 Protein tyrosine phosphatase (PTP) family AT5G23720 65.1 0.0e+00 1087.8
Cla09g02029 . 69 234 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 8.7e-71 263.5
Cla05g02189 . 107 419 Protein tyrosine phosphatase (PTP) family AT3G52180 53.7 2.1e-90 329.3
Cla07g00459 . 10 274 Protein tyrosine phosphatase (PTP) family AT3G10940 67.7 2.5e-104 375.6
Cla10g01351 . 143 558 Protein tyrosine phosphatase (PTP) family AT3G01510 68.6 5.8e-180 627.5
Cla02g01771 . 93 296 Protein tyrosine phosphatase (PTP) family AT2G32960 59.4 3.8e-75 278.5
Cla09g01043 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.1e-73 272.7
Cla10g00234 . 87 419 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.1e-101 365.5
Cla11g00178 . 17 266 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 4.3e-79 292.0
Cla10g00234 . 123 298 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.2e-43 171.0
Cla02g01771 . 127 296 Protein tyrosine phosphatase (PTP) family AT4G03960 78.2 6.3e-78 287.3
Cla09g01043 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.3e-70 260.8
Cla03g01026 . 13 186 Protein tyrosine phosphatase (PTP) family AT4G03960 56.9 2.0e-55 212.6
Cla03g01026 . 7 212 Protein tyrosine phosphatase (PTP) family AT3G02800 65.5 6.0e-76 280.8
Cla02g01771 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.8e-57 218.0
Cla07g00286 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.7e-63 239.2
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla02g00625 . 8 647 Protein tyrosine phosphatase (PTP) family AT3G19420 61.1 1.5e-215 746.1
Cla01g01668 . 74 649 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 6.9e-200 694.1
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla02g02139 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.2e-69 258.8
Cla10g00175 . 50 300 Protein tyrosine phosphatase (PTP) family AT2G35320 62.9 2.9e-90 328.9
Cla04g00726 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.4e-286 982.2
Cla04g00726 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-258 888.6
Cla04g00726 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.1e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009525 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 2 1 0 1 1 1 31