Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01782 GTCCCCACACTTGAAGTAGGTGAAATGAGAATGGTCCGCTTGTTTCTTGAAATCCAAAAAGATCCATATCAGAATTCTGTTAGGACGCTGTCAGAAACAGAAAGACCTGGCACCTTATCCAGAATAAACAGAAACCGAAAAGGTATCGCCTGCTCTGCTGCACCTTCTTCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGATGGGCAAGGCATGGCAATTGGCAATGGCATCCCCAACCACCAACTTTATTTGCTTTTGCTAATTTGTTTACTTTTCCCTTTTCCCTTTTCCAACAGGGAGAGAAAGCGAGGTCTGATACCATATACATACGCTTCGCTTCGCTTTACTTTTCTTTTCAAGACACTGTACAAACTACAGTACTACCATTCACTTCCACTCAACCTTTCCTTCTGTTATGGAAAAACACCATCCCCTTCATCATCAGGTGCCCCTTTTCTTCCCTCTCTCAACTCCTTTCATTCTCTTCCTCTGATCTCATCCCCTCTCTTTTATGTTATGCCGGAATACCAGGATATCAAGGACCTCGACTTGGATCTCGGACCCGACGAGCCTGATCTTGCCCCTCTCCCCCCCACCGTTACTTCCCGGGTACTGCACATGTTGGGAGACATCGCAGCAGGTCCCGCTTACAGGTTTTCCCAATGGCTTGAACTCGTCCGTAAACGTAGCGGCAAACATCGCGCTTCTGCCTTCCACAACCGCCCTCATCCACCTTTCGATATGCCTTTCGGCGCTGAGGAGCTTGTCAATGAATCAAGAACTCTTCCAGCTCCCGAGCAATCAACTGAAACGAATTTGTGGGATAGACTCGCTAAAGCTTCAATGTTGGATATCGAGTCGAGCTGTTTTTCGTGGGATAGGCTTTTGTCGCTTCACCGCACCGAACACAGTAGTAGCACCGAACATTCGGAAGATGAGATGAATAAAGCCCTTGAGGTCACTGTAAATTCTGGTGGAGTCGTTTTCTTTGCACTGTTCAATCAGCTTGGATATGATGATAACGTCCCAAAGGAAGCAGCTGCTGTGATAAAGATATCATCTTCAAGAATGGCCACGCAATCTGAACGCCTTGGTTATGAATTTGCTAAGTGGCTTGGGGTTCAAACTCCACAGGCTAGAGTTATTCATAATTCCAGCACGGAATGGCTCCAGATAAAAGAAGCTGCAGAGAAAGCACGAGATATTGCCTGTTTGGAGGGTGATGAGGTTGGTGAAATGACATGTTCTGAACTATTGGAAGCACTTGAATTTAGCAGATGCCTTTTTCTGATGAGCTATGTGCATGGATCTCCATTGTTGGAAAGTGCATTTGAATCACGAGAAATGGCTGAAAAATTAGCTGCTGCAATTGGAAGGATCTTCCTGTTGGACCTTGTCATTAGAAATGAAGATAGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCGGCAAATTTGCTCTTGGCTGATAGAATGACATCTGCAAATATGAATGCATTTGAGGAAGCCTTTGATTCTGCTATTATGCGATACAAACCAAAAGTCATTACAACGCTTCAAAAAGAAAGAAGGGCAACTTCAGTGGATAATAGATCGAGTTCTAATTCAGGGTTGGTTTCAGAGGTGTCTGAACTTTGTGATATTGTTGAATCCCCAAAATCTAGTAACCGAAGTATAAAAAGTCAAATATCAGATGAAGCATTGCCTTGTGATTTTAATATTGTGGCTATTGACTCTGGTGTTCCTCGTCGACCTCCTGCTGGAAAACGTGCTAATGATCAATCAATTTACCCAAAATTAGTCGAGTTGCTACTTAACAGTTCTGAGTTCTCCTCTAATCTGCTGCATGACATTACAGGAGGGAAATTAGGGTTCCCTTCATCAACTGATGCCAACTCAACTTGTGGCATGCAGCTTACAGATATGAGTTCTATTGTCCATGAATTTCGATATGGGTTTCGTGCTGCTCTTAGAGACTTGCAAGGATTTCACATATTTTTGCTTACCCTTCACCAAAAGTTAGACAACTCATTACGAGCGTTCATGAGTATCATAAATAAATTTCCCTTGGGGGAATCTGACAAAGAGGATGCAGGGATTCCTGAGTCCCATTTGCAGGGTTCTACCACTACTCATTGTTTATCTCCACGTGGTAAGGAACGAGCCTCTAGTGATGGTAATATAGATGTTACAGAGTCAGCTCTAAGATCATCATCGTCAGGAAACAAAGAAAGCTCAGACTTATCTTCTCCCTTGTCACGAGATAGCTCACAAGGAAAGCTATACAAAGGAAGTGCAGAGCCCATTCATAGCCTTCGTTTGACTGCAAAGCTTCGAGACTTTCATAAATTTGCCAAAGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAGTGCTAAAGAATGAAGCTGTTAAACTCTGCCAGGAGAATAAATTTAATACTGGGTTTTTTGAGGGCAGCGATAGTCATGGAGTTGTTGATGCTTATGAATTGAAGGTGAGACTTGAGCACATTCTTGAAAGGATTGCACTAATATCTGAGGCTGCAAATACAGAAAGGCCTTCTTCAGTTACACCTGCCTTGTTTATAGGCGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAGTTACTCATATTTTATGTCTCTGCTCAAATGAAATTGGGCAGTCAGATTCTCAGTTTCCTGATCTATTTGAATACAAAAATTTTTCAATAAGTGATGATGAAGACTCAAACATCAGCAGCATCTTTGAAGAAGCTTCTGATTTTGTTGATGACGTTGAAAGAAAGAGTGGGAAGGTCCTGGTTCATTGTTTTGAAGGGAAAAGCAGAAGTGCCACATTAGTTCTTGCTTACTTGATGCTCAGAAAGAAATACACACTGTTAAAAGCATGGAATGCCTTGAAACGGGTTCACCGGCGAGCTCAACCTAATGATGGGTTTGCCAAAACATTATTAGAGTTAGATCGAAGAATACATGGAAAGGTATCCATGGAGTGGCAATCACGAAAACCAACCATGAAAGTTTGCCCAATTTGTGGGAAAAATGCTGGACTGAGCAGTAGCTCACTGAAACTTCATTTGCAAAAATCACACAAGAAGCTATCATCTGGGAGTGTAGACAGCGCAATGACCATGGAAATACAGAAAGCATTGACAGCTCTGAGGATCAGTCGTGGAGGAAGCGTGAGCCCAACCCAAAGGCAATCTCTTCTCATCTTGGATGAATAG 3270 42.72 VPTLEVGEMRMVRLFLEIQKDPYQNSVRTLSETERPGTLSRINRNRKGIACSAAPSSSSSSSSSSSSSSSSDGQGMAIGNGIPNHQLYLLLLICLLFPFPFSNRERKRGLIPYTYASLRFTFLFKTLYKLQYYHSLPLNLSFCYGKTPSPSSSGAPFLPSLNSFHSLPLISSPLFYVMPEYQDIKDLDLDLGPDEPDLAPLPPTVTSRVLHMLGDIAAGPAYRFSQWLELVRKRSGKHRASAFHNRPHPPFDMPFGAEELVNESRTLPAPEQSTETNLWDRLAKASMLDIESSCFSWDRLLSLHRTEHSSSTEHSEDEMNKALEVTVNSGGVVFFALFNQLGYDDNVPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNSSTEWLQIKEAAEKARDIACLEGDEVGEMTCSELLEALEFSRCLFLMSYVHGSPLLESAFESREMAEKLAAAIGRIFLLDLVIRNEDRLPCRLLRWRGNSANLLLADRMTSANMNAFEEAFDSAIMRYKPKVITTLQKERRATSVDNRSSSNSGLVSEVSELCDIVESPKSSNRSIKSQISDEALPCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGFPSSTDANSTCGMQLTDMSSIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMSIINKFPLGESDKEDAGIPESHLQGSTTTHCLSPRGKERASSDGNIDVTESALRSSSSGNKESSDLSSPLSRDSSQGKLYKGSAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTPALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDSNISSIFEEASDFVDDVERKSGKVLVHCFEGKSRSATLVLAYLMLRKKYTLLKAWNALKRVHRRAQPNDGFAKTLLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALRISRGGSVSPTQRQSLLILDE 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31232675 31246516 + ClCG06G018320.1 Cla06g01782 275974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01782 1089 SMART dsp_5 862 1004 IPR020422 GO:0006470|GO:0008138
Cla06g01782 1089 Pfam Dual specificity phosphatase, catalytic domain 878 1003 IPR000340 GO:0008138|GO:0016311
Cla06g01782 1089 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 187 1088 IPR035010 GO:0004721|GO:0009737|GO:0043622
Cla06g01782 1089 Gene3D Protein tyrosine phosphatase superfamily 840 1008 IPR029021 -
Cla06g01782 1089 MobiDBLite consensus disorder prediction 701 769 - -
Cla06g01782 1089 MobiDBLite consensus disorder prediction 709 723 - -
Cla06g01782 1089 MobiDBLite consensus disorder prediction 50 75 - -
Cla06g01782 1089 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 862 1006 IPR029021 -
Cla06g01782 1089 ProSitePatterns Tyrosine specific protein phosphatases active site. 949 959 IPR016130 GO:0016311|GO:0016791
Cla06g01782 1089 Gene3D - 445 691 IPR036940 GO:0016301
Cla06g01782 1089 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 934 983 IPR000387 GO:0016311|GO:0016791
Cla06g01782 1089 SUPERFAMILY Protein kinase-like (PK-like) 226 600 IPR011009 -
Cla06g01782 1089 CDD DSP 863 1000 - -
Cla06g01782 1089 Pfam Actin-fragmin kinase, catalytic 275 559 IPR015275 -
Cla06g01782 1089 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 187 1088 - -
Cla06g01782 1089 MobiDBLite consensus disorder prediction 733 766 - -
Cla06g01782 1089 ProSiteProfiles Dual specificity protein phosphatase domain profile. 862 1007 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00547 Cla-Chr6:6643638 Cla06g01782 Cla-Chr6:31232675 1.14E-16 dispersed
Cla06g01782 Cla-Chr6:31232675 Cla07g00286 Cla-Chr7:3145477 1.48E-21 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01782 K14165 - csv:101220184 1623.99