Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01783 ATGGCCTCCTCCGAGGTTTCGATCAACCCCAATTCCGCCTCCTTCAACGACCATACCGATTCTACCAAAGACACCTCCGATCCACCCAACGCTCTCTCTGTCAGGGATGCTGATATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGCCCTCTCGTTTCGGTTCCTCGCGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACAAGTCAAGTGGCAGACCAGCAGATGCCTGTATATAACCTTCCATGGAAGATCCTCTGCCGCGTTATTAATGTGCACTTAAAGGCCGAACCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGAATGCTGTGGACAAGGAACCCCCACCTCCTCCCCCGCGGAGATTTCATGTGCATTCCTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAGCCTCCTACTCAGGAGTTGGTTGCAAAGGATTTGCATGGAACAGAATGGCGTTTTCGTCATATATTTCGAGGGCAACCGCGTAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGCGTTGGTGTAAGGCGTGCCATGAGACAACATGGCAACGTCCCATCATCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCTATTTCCACAGGCACAATGTTCACTGTCTACTATAAACCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATTGGAATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAACAGAGATTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGACGAGACTTCTACTATTTCTCGTCCGGAGAAAGTTTCACCATGGAAAATTGAGCCTGCCCTTGCTCCTCCTGCACTGAACCCCCTTCCTATGACTAGACCTAAGAGGCCTCGATCAAATATGGTATCTACATCCCCCGATTCCTCTGTTCTTACACGAGAAGGTTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATCGATAGTAATGATCCAGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATAGCTGGATACCACCTCCAGGAAGGAGTGAGCCAACTTATGCCGATCTTCTGTCAGGTTTTGGAACTAATATTGATTCATCTCATGGTGTTCGAGCTGGCATGGGAGATTCAGCAGTAGTCACTGTTAATTCAATCAGAAAGCATGCCATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGCCTTGCCTTCTGGTCTCTCGCTCAACCTGGTTGACTCTAGTCAGAGGGGTCATATTCAGGCTGGTGACTTATCTTATCAAGGGAGAGGAAATGCTACCTTCAATGGATTTGGTGATCATTCCATGGCCCATTGTCATAGAACAGAACAGCCTCATGGAAACTGGTTGATGCCTCCACCTTCATCTCATTTTGACTATCCAGTTCATTCAACTGAACTGATGTCAAAACCTATATTATTTCAGAACCAAGATATACTGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCAATAAAAATCCTGCCATTCCAGACCCTGCAGGACTGAGTAGAAATATGATGAACGAGGCAGCAGATGTTATGCATCCTAATATACATCAAATCCATTCAAACGAGTCTGACCTGAAGGCTGAACTATCTAGAGGTTCAAAATTGGCTGATAAATCCCTTGCCATCAATGAGGCTGATAAGTTGCAGCAACCATGCGCACATAACTCGAAGGACACACACAGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGTGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATATACGGATGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAAATTTAAAAGGTGATGAGAATCCATCCATTGAAGGGGAAGAAGCAAAAGAGATCAAAAGTCAGGCAGTACCTTCGATGTCAGTACCCGAGAGTTTTTGGTGCGGTACGGAAGGAGTTGAGCAGAGTAATGCAGCGAGGCCGGAAGGTTGCGGCCTTATGTTAAAGCTGCCGCTCATCTATCCTCGTGTTTCTTTGGCGATTCGCTGCTGTGGGTTTAGCTCCGCCGCTGACACTGTCGCCGTTTATAGTCGTCGTCTCATCTTCTCCGCCCTTCTCTTCCCACCGAACGCCTTATCAGTATCAACTCTCAAGTCAGTGGATATCATGGCGAGAGTTCTGGTTCAGTCGACAAATATTCCTGGTTTGGTCGGTGGAAGAAAGAATGGCCTATCATCAAGGGGGTCAGCAAATGTAAAACGGGTTGTTAAAATGATGGCCACCGTACATGCACCTGGTTTGACAATAAGAAGTTTCTCTGGACTCAGGGGATTTAATTCTTTGGATAACATGTTGAGAACTGGACAAAATTTTCATTCTAAGATGGCCATTACAATCTCTAGGCGACGAAAGGCTAGCAGGTGTGTTCCAAGAGCTATGTTTGAGCGGTTCACAGAAAAGGCAATTAAAGTCATCATGCTTGCCCAGGAGGAAGCGAGGCGGCTTGGTCACAATTTTGTTGGCACAGAGCAGATACTTTTAGGTCTTATTGGCGAAGGCACTGGCATCGCTGCTAAGGTTCTTAAATCTATGGGAATTAATCTTAAAGATGCGCGCGTGGAGGTGGAGAAGATAATTGGTAGGGGCAGCGGCTTTGTTGCTGTAGAAATTCCATTCACTCCTCGGGCAAAGCGTGTTTTGGAACTTTCTCTTGAAGAAGCTCGCCAACTTGGCCACAATTATATTGGGTCAGAGCACTTGCTTCTGGGACTACTTCGTGAAGGTGAGGGCGTTGCAGCTCGTGTTCTCGAAAACCTAGGTGCTGATCCTAGTAACATTCGCACTCAGGTAATTAGAATGGTTGGTGAGAGTACGGAGGCTGTTGGTGCTGGTGTTGGAGGAGGAAGCAGTGGGAACAAGATGCCAACCCTGGAAGAGTATGGCACAAATTTAACTAAGCTGGCTGAAGAGGGTAAACTAGATCCTGTTGTTGGAAGGCAGCAGCAAATAGAACGTGTAACCCAGATTTTGGGTCGGCGGACAAAAAATAATCCTTGCCTCATTGGCGAGCCTGGTGTTGGGAAAACTGCTATTGCTGAAGGTCTGGCACAAAGGATTGCTAATGGGGATGTCCCTGAAACAATAGAAGGAAAGAAGGTTATAACCCTGGATATGGGCCTTCTCGTAGCTGGCACAAAATATCGTGGAGAGTTTGAGGAAAGATTAAAGAAACTGATGGAGGAAATTAAACAAAGTGATGAGATTATCCTTTTTATTGATGAGGTGCACACATTAATTGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAATATATTGAAACCTGCCCTCGCAAGAGGTGAACTGCAGTGCATTGGAGCCACGACATTGGATGAATACAGGAAGCACATTGAAAAAGACCCAGCCTTAGAAAGGAGATTTCAGCCAGTCAAAGTGCCGGAACCATCTGTGGATGAAACCATACAGATTTTGAAAGGCCTTAGGGAGCGGTATGAAATCCACCACAAACTTCGTTACACAGATGAAGCACTAGTAGCTGCTGCGCAGCTGTCATACCAGTACATCAGTGATCGGTTCTTGCCTGATAAGGCAATCGACTTGGTTGATGAAGCAGGTTCTCGGGTTCGCCTGCGTCATGCTCAACTACCTGAGGAAGCCAGGGAGCTTGAGAAAGAGCTGAGGCAGATCACAAAGGAGAAGAATGAGGCTGTTCGAAGTCAAGACTTTGAGAAGGCTGGAGAATTACGTGACAGAGAAATGGAACTTAAGACTAAGATCTCTGCTCTAGTAGACAAGGGCAAGGAGATGAGCAAGGCTGAAAGCGAGGCAGGAGATGTAGGCCCTGTTGTGACTGAGGTCGATATTCAGCATATTGTCTCCTCCTGGACTGGCATTCCTGTCGAGAAAGTATCTACTGACGAATCTGATCGCCTCCTCAAAATGGAAGAGACCCTCCATAAGAGGGTCATTGGTCAAGATGAAGCAGTTAAAGCCATCAGCCGTGCCATACGGCGAGCTCGGGTTGGTCTGAAGAATCCCAATCGTCCAATTGCAAGCTTTATATTTTCTGGTCCAACTGGTGTTGGTAAATCTGAGTTAGCAAAAGCGTTGGCTGCATACTATTTTGGGTCTGAAGAAGCAATGATTCGCCTTGACATGAGTGAATTTATGGAGAGGCATACTGTCTCCAAGCTCATTGGTTCCCCTCCTGGCTATGTTGGTTACACGGAGGGTGGTCAATTAACTGAGGCTGTTCGTCGTCGTCCATACACAGTGGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTGTTCAACATGATGCTTCAAATTTTAGAGGATGGAAGGTTGACAGATAGTAAGGGCAGGACTGTAGACTTCAAAAATACACTTTTGATAATGACATCAAATGTGGGAAGCAGTGTTATAGAGAAGGGAGGTCGCAGAATAGGGTTTGACCTCGATTATGACGAGAAGGATAGTAGTTACAACCGGATCAAGAGCTTGGTGACAGAGGAACTGAAACAATACTTCAGGCCTGAGTTTTTGAATAGGTTGGATGAGATGATTGTCTTCCGTCAGCTCACAAAACTGGAGGTGAAGGAGATTGCGGATATAATGCTGAAGGAGGTATTTGATAGGTTAAAAGCAAAAGAAATAGACCTTCAAGTGACAGAAAGATTTAGAGATAGGGTGGTGGAGGAAGGATATAACCCAAGCTACGGTGCGAGACCATTGAGAAGGGCAATAATGAGACTTTTGGAGGACAGCATGGCAGAGAAGATGCTGGCAAGGGAGATCAAGGAGGGTGACTCGGTAATAGTTGATGTCGATTCAGACGGAAACGTCACAGTGCTCAACGGCAGCAGCGGTGCTCCCGAGTCCCTGCCGGATGCCATCCCTGTGTAA 5550 46.31 MASSEVSINPNSASFNDHTDSTKDTSDPPNALSVRDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTSQVADQQMPVYNLPWKILCRVINVHLKAEPDTDEVFAQITLLPEANQDENAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGTEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVSTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDSNDPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADSWIPPPGRSEPTYADLLSGFGTNIDSSHGVRAGMGDSAVVTVNSIRKHAMDQDGKFNFLGGSSWSALPSGLSLNLVDSSQRGHIQAGDLSYQGRGNATFNGFGDHSMAHCHRTEQPHGNWLMPPPSSHFDYPVHSTELMSKPILFQNQDILKPKDGNCKLFGISLNKNPAIPDPAGLSRNMMNEAADVMHPNIHQIHSNESDLKAELSRGSKLADKSLAINEADKLQQPCAHNSKDTHSKSQGTSARSCTKVHKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLNLKGDENPSIEGEEAKEIKSQAVPSMSVPESFWCGTEGVEQSNAARPEGCGLMLKLPLIYPRVSLAIRCCGFSSAADTVAVYSRRLIFSALLFPPNALSVSTLKSVDIMARVLVQSTNIPGLVGGRKNGLSSRGSANVKRVVKMMATVHAPGLTIRSFSGLRGFNSLDNMLRTGQNFHSKMAITISRRRKASRCVPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMELKTKISALVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKEIDLQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLPDAIPV 1849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31246818 31267080 - ClCG06G018330.2 Cla06g01783 275975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01783 1849 SMART B3_2 147 249 IPR003340 GO:0003677
Cla06g01783 1849 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 1003 1849 - -
Cla06g01783 1849 Pfam ATPase family associated with various cellular activities (AAA) 1224 1340 IPR003959 GO:0005524|GO:0016887
Cla06g01783 1849 Gene3D - 1364 1508 - -
Cla06g01783 1849 Pfam Clp amino terminal domain, pathogenicity island component 1109 1160 IPR004176 -
Cla06g01783 1849 Pfam Clp amino terminal domain, pathogenicity island component 1033 1085 IPR004176 -
Cla06g01783 1849 CDD AAA 1202 1354 - -
Cla06g01783 1849 MobiDBLite consensus disorder prediction 707 727 - -
Cla06g01783 1849 SMART ClpB_D2_small_2 1742 1832 IPR019489 -
Cla06g01783 1849 ProSiteProfiles PB1 domain profile. 726 810 IPR000270 GO:0005515
Cla06g01783 1849 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1566 1584 IPR001270 GO:0005524
Cla06g01783 1849 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1673 1687 IPR001270 GO:0005524
Cla06g01783 1849 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1611 1629 IPR001270 GO:0005524
Cla06g01783 1849 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1640 1658 IPR001270 GO:0005524
Cla06g01783 1849 CDD B3_DNA 145 247 IPR003340 GO:0003677
Cla06g01783 1849 MobiDBLite consensus disorder prediction 1 31 - -
Cla06g01783 1849 Gene3D - 1173 1362 IPR027417 -
Cla06g01783 1849 Gene3D - 144 249 IPR015300 -
Cla06g01783 1849 SMART AAA_5 1562 1743 IPR003593 -
Cla06g01783 1849 SMART AAA_5 1219 1359 IPR003593 -
Cla06g01783 1849 ProSitePatterns Chaperonins clpA/B signature 1. 1314 1326 IPR018368 GO:0005524
Cla06g01783 1849 ProSiteProfiles UVR domain profile. 1436 1471 IPR001943 GO:0005515
Cla06g01783 1849 Pfam AUX/IAA family 710 811 IPR033389 -
Cla06g01783 1849 Gene3D - 1018 1166 IPR036628 -
Cla06g01783 1849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1511 1828 IPR027417 -
Cla06g01783 1849 ProSitePatterns Chaperonins clpA/B signature 2. 1596 1614 IPR028299 -
Cla06g01783 1849 MobiDBLite consensus disorder prediction 381 421 - -
Cla06g01783 1849 ProSiteProfiles Clp repeat (R) domain profile. 1019 1161 IPR004176 -
Cla06g01783 1849 CDD AAA 1536 1684 - -
Cla06g01783 1849 SUPERFAMILY CAD & PB1 domains 723 803 - -
Cla06g01783 1849 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Cla06g01783 1849 Coils Coil 1273 1293 - -
Cla06g01783 1849 Gene3D UVR domain 1428 1492 - -
Cla06g01783 1849 Gene3D - 310 380 - -
Cla06g01783 1849 Pfam Auxin response factor 273 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cla06g01783 1849 Pfam AAA domain (Cdc48 subfamily) 1561 1735 IPR003959 GO:0005524|GO:0016887
Cla06g01783 1849 Gene3D - 1514 1740 IPR027417 -
Cla06g01783 1849 SUPERFAMILY Double Clp-N motif 1020 1161 IPR036628 -
Cla06g01783 1849 Pfam C-terminal, D2-small domain, of ClpB protein 1742 1822 IPR019489 -
Cla06g01783 1849 Gene3D - 1742 1838 - -
Cla06g01783 1849 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Cla06g01783 1849 MobiDBLite consensus disorder prediction 395 421 - -
Cla06g01783 1849 Gene3D - 722 815 - -
Cla06g01783 1849 PANTHER ATP-DEPENDENT CLP PROTEASE 1003 1849 - -
Cla06g01783 1849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1179 1461 IPR027417 -
Cla06g01783 1849 SUPERFAMILY DNA-binding pseudobarrel domain 144 276 IPR015300 -
Cla06g01783 1849 Coils Coil 1425 1452 - -
Cla06g01783 1849 Pfam AAA lid domain 1362 1463 IPR041546 -
Cla06g01783 1849 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02048 Cla-Chr2:35525066 Cla06g01783 Cla-Chr6:31246818 1.29E-28 dispersed
Cla03g00163 Cla-Chr3:1754103 Cla06g01783 Cla-Chr6:31246818 0 dispersed
Cla05g00811 Cla-Chr5:7926046 Cla06g01783 Cla-Chr6:31246818 6.36E-11 dispersed
Cla05g01689 Cla-Chr5:28604761 Cla06g01783 Cla-Chr6:31246818 0 dispersed
Cla06g01547 Cla-Chr6:29044164 Cla06g01783 Cla-Chr6:31246818 8.63E-63 dispersed
Cla06g01783 Cla-Chr6:31246818 Cla09g02119 Cla-Chr9:38786185 7.77E-14 dispersed
Cla08g00767 Cla-Chr8:20014235 Cla06g01783 Cla-Chr6:31246818 2.88E-62 dispersed
Cla11g00028 Cla-Chr11:389045 Cla06g01783 Cla-Chr6:31246818 5.53E-26 dispersed
Cla11g01119 Cla-Chr11:22729888 Cla06g01783 Cla-Chr6:31246818 7.07E-18 dispersed
Cla11g01194 Cla-Chr11:25013843 Cla06g01783 Cla-Chr6:31246818 4.45E-08 dispersed
Cla06g01783 Cla-Chr6:31246818 Cla04g01163 Cla-Chr4:26843030 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61352 PF07724 AAA_2 7.00E-55 CL0023 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01783 K03696 - csv:101207083 1699.87