Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01787 ATGACCCAGCCGGTGAAGAAACCCAAAGTGGAGGAACTTTGCTATGCGCAGTCACCTGAAACCGTTACGGCAGAACTAGATGAATGCAATAGTACCGCCGACGACCAAGAGGCGGCACTCATTGCTCTAGTCGAGCATCGTACTCGGGAAGTTCACCATCTTCAGCAGCGTATTTCCTACTACTCTCGTCAGCTGGAGGAAGCAGAGAAGCGGTTACAGGAATCTGAATCTTTGTTGGCCCGCTTTCGAGGTCCGTGTTATACTTTGTCATCAAGAAGTTCTCAGGATTGTGAATTCAAATGTGTGGAGGCTGAACCTAGATCAGCCAGTCCTATTCATGCCAATGGAGGTTCTGAAGCAAAACGACTTCTTGGTTCCAGTCACAGCCCTTCCATTCCCAATCGCTCTAATCTTGCTACAACAGGTGAACAAGGAAAACCTTGTATGGTCTCTTCTATGGGGAAAGTTGTTGATGATCAAAGTGATAGGAAAAGAAGAAAGTTTGGTAATGCTTCAACCTTTTGTTCAAGTGCTATGTTTTTCCATGCTACTTCATCAGTTTCAGATGATGTACTTTACTACAACTCAGGTCCTCCCATGTTTGCACTCATGATGTTTGCATTGTGTATGTCAGAGCAAAAAGATCACAAGGAATTGATTCCATTAGTACGAAGTAGCTCTTCCCCATTGACTGCCCAACGAGATGCTAGCTACTATTTTTCCAGTCAGCACAAGAGAAAACTGAGAAGCCTTGCTCCATCTCCCGTTAATGACCAACTTTTCGTTACCAGTGCTTTGGATGGAATGATCAACCTGTGGCAAGTTGAGTCCAAGGGGTCGTTTGCCTCTCTTCTTTGTACTACTGACTGTATGTCTCAAAAGCAAAGGAGATGGCCTGAAGATATGGCATGGCACCCGGCAGGAAACAGCCTATTTGCCGTGTACAGTGCTGATGGTGGAGATTCTCAAATATCGATCTTGAACTTCAATAGGACTAAAGAGAAGGCCAGTGTTACTTTCTTAGAGGATAAGCCTCATGTTAAAGGCATTATCAACGGCATTAGTTTCTTGCCTTGGGAATCTGTCCCATTCATTACTGGTGGCAGTGACCATGCTGTCGTTCTATGGACTATGAAAGATAGACAGAACACATGGAAACCAGAGCTGTTGCACAGGAATCTGCACTCTTCAGCTGTCATGGGTGTCTCTGGGATGCAGATGAAGCAAATTGTACTTTCTGCAGGTGCAGACAAGAGAATCCTTGCTTTTGATGTTCAAGTAGGAAGTGTACTCTTCAAGCATCAATTAGAGAGTAAATGTATGAGTGTCTTGCCTAATCCACGTGACTTTAACCTGTTCATGGTTCAAACAGGGAGTCCAGAAAAGCAACTTAGATTATTTGACATTAGATTGGAACAGAAAGAAGTCCACAGTTTTGGGTGGAAGCAAGAAAGCAGTGAATCTCAATCAGCTCTGATAAATCAGGCATGGTCACCTAATGGTTTACACCTAACATCTGGTTCATCAGATCCTGTAATTCATGTTTTTGACATCAGGTATAATTCTCACATGCCATCTCAATCAATTAAAGCTCATCAGAAACGCGTCTTCAAAGCTGTTTGGCTCCATTCTCTTCCTTTTCTTGTTTCCATTTCATCCGATTTGAACATTGGACTGCACAAAATGGAGGAAAATGTGCTTGAGTTAGTTGCCTACAGGAGGGCAGCAGATAACAATGTGGTTGTGATAACACTAAAACCTGATGACAAACCACGAAGACTTGATGCAGCTGCCGCTTATGACTGGGTGCAAAGGGTGGTGAAAATTAAAAAAGTGGATTCGAAGCGAGGGAAGAGGCCCCTTTGTTCCGATGAGTCGGAGGAAGAAAATCCGTTGCCGATCTACTCAGCTAGATCTGAACATGACATGTCAGCCATGGTTTGTGCGTTAGGTGAAGTGATAAGGAGTGGGAGTAGCAAAAGCCCAGCGGTAGTTGAAGCAGATTATTGGCCAGAATCGGAATCGCAATCGCAGCGAGCAGATCATGAAGAAGAAGTGAAAAGAGAGAGTCGGCATTATCGAGGAGTAAGACAGAGACCGTGGGGAAAATGGGCAGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGCTAGGCACCTTCGACACTGCTGAGGCTGCAGCACTTGCTTACGATGAAGCTGCCCTTAGATTCAAAGGCACAAAAGCCAAGCTCAACTTCCCTGAGAGGCTCACCACTCCACCCTCCTATGCCTATCATCATCCCACCTTTATGCTCAATCTCCACTCCTCAACTTCTCATCCTTCCCATCATCAGGACCACAAAAACTAA 2355 44.84 MTQPVKKPKVEELCYAQSPETVTAELDECNSTADDQEAALIALVEHRTREVHHLQQRISYYSRQLEEAEKRLQESESLLARFRGPCYTLSSRSSQDCEFKCVEAEPRSASPIHANGGSEAKRLLGSSHSPSIPNRSNLATTGEQGKPCMVSSMGKVVDDQSDRKRRKFGNASTFCSSAMFFHATSSVSDDVLYYNSGPPMFALMMFALCMSEQKDHKELIPLVRSSSSPLTAQRDASYYFSSQHKRKLRSLAPSPVNDQLFVTSALDGMINLWQVESKGSFASLLCTTDCMSQKQRRWPEDMAWHPAGNSLFAVYSADGGDSQISILNFNRTKEKASVTFLEDKPHVKGIINGISFLPWESVPFITGGSDHAVVLWTMKDRQNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGADKRILAFDVQVGSVLFKHQLESKCMSVLPNPRDFNLFMVQTGSPEKQLRLFDIRLEQKEVHSFGWKQESSESQSALINQAWSPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSIKAHQKRVFKAVWLHSLPFLVSISSDLNIGLHKMEENVLELVAYRRAADNNVVVITLKPDDKPRRLDAAAAYDWVQRVVKIKKVDSKRGKRPLCSDESEEENPLPIYSARSEHDMSAMVCALGEVIRSGSSKSPAVVEADYWPESESQSQRADHEEEVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYAYHHPTFMLNLHSSTSHPSHHQDHKN 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31286507 31294181 + ClCG06G018370.1 Cla06g01787 275979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01787 784 MobiDBLite consensus disorder prediction 669 688 - -
Cla06g01787 784 SUPERFAMILY DNA-binding domain 692 750 IPR016177 GO:0003677
Cla06g01787 784 Coils Coil 51 78 - -
Cla06g01787 784 MobiDBLite consensus disorder prediction 122 145 - -
Cla06g01787 784 Gene3D - 151 449 IPR015943 GO:0005515
Cla06g01787 784 Pfam AP2 domain 692 741 IPR001471 GO:0003700|GO:0006355
Cla06g01787 784 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 6 562 - -
Cla06g01787 784 Gene3D AP2/ERF domain 691 751 IPR036955 GO:0003700|GO:0006355
Cla06g01787 784 MobiDBLite consensus disorder prediction 108 145 - -
Cla06g01787 784 Pfam WD domain, G-beta repeat 494 517 IPR001680 GO:0005515
Cla06g01787 784 Gene3D - 482 666 IPR015943 GO:0005515
Cla06g01787 784 SMART rav1_2 692 755 IPR001471 GO:0003700|GO:0006355
Cla06g01787 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 283 IPR001680 GO:0005515
Cla06g01787 784 CDD AP2 692 750 IPR001471 GO:0003700|GO:0006355
Cla06g01787 784 ProSiteProfiles AP2/ERF domain profile. 692 749 IPR001471 GO:0003700|GO:0006355
Cla06g01787 784 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 6 562 - -
Cla06g01787 784 PRINTS Ethylene responsive element binding protein signature 693 704 IPR001471 GO:0003700|GO:0006355
Cla06g01787 784 PRINTS Ethylene responsive element binding protein signature 715 731 IPR001471 GO:0003700|GO:0006355
Cla06g01787 784 SUPERFAMILY WD40 repeat-like 247 566 IPR036322 GO:0005515
Cla06g01787 784 SMART WD40_4 386 424 IPR001680 GO:0005515
Cla06g01787 784 SMART WD40_4 522 561 IPR001680 GO:0005515
Cla06g01787 784 SMART WD40_4 337 377 IPR001680 GO:0005515
Cla06g01787 784 SMART WD40_4 472 517 IPR001680 GO:0005515
Cla06g01787 784 SMART WD40_4 231 274 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01787 Cla-Chr6:31286507 Cla01g01548 Cla-Chr1:30135007 2.33E-30 dispersed
Cla03g00381 Cla-Chr3:4404330 Cla06g01787 Cla-Chr6:31286507 0 wgd
Cla06g00156 Cla-Chr6:1743252 Cla06g01787 Cla-Chr6:31286507 1.32E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61353 PF00847 AP2 3.00E-14 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01787 - - csv:101206361 893.264