Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01789 ATGTATTTAAGCTTGAAAAAGGGTGGAAGGCGAAGGATATGGTTGGGTGGTTTTAGGTTACTGCATCGGAGGAGGGAGGGGTACAGGAAGAATACACGGACAGAGGTGAAGATGTTGCTGAAGCAGAGATACTTGGACCGCAAAAGGATTACTTCCGCCCTTCTCGCTACCTCTCCCTCTGCTTCACCAGCGCCCTCTTGGAATTCCAAAGATTATCAAACCCTTTATCGTGTTCTTGAAGCCTGCAGACTCTTCCCCTTCAATTCCAAAACTGCTATTGAAACGCATGCACGGATTATTAAATTTGGATATGGAAACTACCCAACTCTCATCACCTCTCTAGTATCGACTTATCAACGTGCCGGTTGCCTTAATCGGGTCCATCAACTTCTTGATCTACTCTGCTCTAAGCATCTTGATTTAGTTGCAATGAACTTACTCATTGAAAATTTTATGAAAATCGGGGAGTGCAAATTTGCTAAAAAGGTATTTTACAAAATGCCTCACCGTGATGTGGTAACATGGAACTCAATCATTGGAGGTTATGTGAAGAATGCACGGTATGACGAGGCGTTTAGATTCTTTAGACAGATGCTGGACTCAAATATTCAGCCGGACGGATTTACATTTGCTTCCTTATTGAATGCATGTGCTCAGCTCGGAGCTCCAAGTAAGACTCAGTGGGTTCATGCTCTGATTACTCGGAAAAAAATTGAGCTTAATTCTATATTAAGTTGTGCACTCATAGACGCGTACTCAAAGTGTGGTAGCATCCAAATTGCAGAGGAAATGTTTAGTTGCGTCCCTCACAGTGACGTCTCAGTTTGGAATGCGATGATCAAAGGGCTTGCAATTCATGGCCTTGCAATGGAAGCATTATCGTTATTCTTGACGATGGAGCGGGAGAATGTTGTGCCTGATGCTGTCACCTTTTTGGGTATTTTAACAGCCTGCAACCATGGTGGTTTAATTGACGAGGGTCGTAGGTATTTTGATTGGATGAAAAGCCGTTATTCAATTCAGCCACAGCTTGAGCATTACGGAGTCATGGTTGATCTGTATAGCCGAGCTGGGTTTCTGGAAGAGGCCTATTCCCTAATCGTGGCAATGCCACTAGAGCCAGATGTTGTCACATGGAGGACGCTTCTGAGTGGTTGTAGAATTTACAGAAATCAAAAACTCGCAGAAGTTGCTATTGCAAATATGTCTCATCGTAAGAGTGGAGATTACGTGTTATTATCAAATATCTATTGTTCTCTCAACAGATGGGAGCATGCAGAAACAGTTAGAAAGATGATGAAAATCAATGGGGTTCGTAAGAATTGTGGAAAAAGCTGGATTGAGTTGGGAGGTACCATTCAAAACTTCAAGTCGGGCGATCGATCACATCCGGAAAGCGATGCAATATACAAATTGCTGTGCAGTTTGATGAAGAGAACTCGGTCAGAGGGATATACGCCTGTGACAGAGTTGGTTTTCATGGATATCTCTGAGGAGGAGAAGGAAGAGAACTTATCATTTCACAGCGAAAAGATAGCATTGGCTTATGCGATCCTGAAAACTAGTCCTGGGGCAAAGATCAGTATATCAAAGAACCTGCGGATCTGTGATGATTGTCATACATGGATAAAACTAGTTTCAAGGGTGCTCTGCAGAACTATAGTAGTGAGGGATCGGATCCGGTTTCATCAATTTGAAGGTGGCATGTGTTCCTGTGGTGATCGTTGGTAA 1731 43.1 MYLSLKKGGRRRIWLGGFRLLHRRREGYRKNTRTEVKMLLKQRYLDRKRITSALLATSPSASPAPSWNSKDYQTLYRVLEACRLFPFNSKTAIETHARIIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVAMNLLIENFMKIGECKFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLDSNIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQIAEEMFSCVPHSDVSVWNAMIKGLAIHGLAMEALSLFLTMERENVVPDAVTFLGILTACNHGGLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTWRTLLSGCRIYRNQKLAEVAIANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKINGVRKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDISEEEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVVRDRIRFHQFEGGMCSCGDRW 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31307664 31309963 + ClCG06G018390.1 Cla06g01789 275981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01789 576 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 54 522 - -
Cla06g01789 576 Pfam PPR repeat 346 370 IPR002885 -
Cla06g01789 576 Pfam PPR repeat 247 266 IPR002885 -
Cla06g01789 576 Pfam DYW family of nucleic acid deaminases 484 576 IPR032867 GO:0008270
Cla06g01789 576 Pfam E motif 389 448 IPR046848 -
Cla06g01789 576 PANTHER OS07G0578800 PROTEIN-RELATED 54 522 IPR045215 GO:0003723|GO:0009451
Cla06g01789 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Cla06g01789 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Cla06g01789 576 Pfam PPR repeat family 170 218 IPR002885 -
Cla06g01789 576 Pfam PPR repeat family 272 318 IPR002885 -
Cla06g01789 576 Gene3D Tetratricopeptide repeat domain 270 466 IPR011990 GO:0005515
Cla06g01789 576 Gene3D Tetratricopeptide repeat domain 78 269 IPR011990 GO:0005515
Cla06g01789 576 Pfam E+ motif 456 479 IPR046849 -
Cla06g01789 576 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Cla06g01789 576 TIGRFAM PPR: pentatricopeptide repeat domain 173 206 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01789 - - - bhj:120071309 997.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01789 Cla-Chr6:31307664 Cla01g01678 Cla-Chr1:31713081 7.93E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g11 . . Bda06g00704 . . . . Bma12g01100 . . Cma10g00008 . Car10g00005 . . . . . . . . . . . Cla06g01789 . . . . . . . . . . . . . . . . . . Bpe07g00912 . . . . Cmo10g00006 . . . . . . Cpe18g00944 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012825 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 27