Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00046 ATGGCTTTCCAGAATATCGAAGTAACCCATTTCTATACGGTTCTTCTATGGTTTATGGTCTACGCAATAACGCACTGCTTTGCGGAATCGTCGACGTGCTTGATGGTGTACAAGGAAGGCGGCGCTCCGGCGGTATTTCAATCCCCGAAATGCCCTCTTTGGAAGCTCTCCGACTACACATTTCAACCTCCCAACGCCCCTCCTTGTCAAATTGCAATGCATCAGGGTCGTAGGAAGTATCAGGAGGATCGCACTCTTTGTGCTCTCGACGTTCGAATTCCCTTCCCAAGTAAAACAGGTCTTAAGGAGGTTCCTGTGGGAATTATAGCAGTTTTTGATGGTCATAATGGTGCTGAAGCTAGTGAGATGGCTTCAAAGATTTTGTTGGAGTATTTTGTCGTGCATACTTATTTTCTTCTTGATGCCACTTACTCTGGAATTTTCAAGAGATCCATTAAGACATCTTCAAATGAGAGGGAACATTGTACCCTCTTTAATCAACTTAGTTGGAGCGACAAAATTAGTAACCTTGACCTGGAACTTGGAAGGCTTAAATACTTACTTCCAGCAGATTTTGAAGATGATTTCCATTTGGAAATTTTGAAAGAAGCACTGCTGAGAGCTATACAAGATATTGATAAAACATTTTCCAAGGAGGCACATAAAAATAATCTTGTTTCCGGTTCTACTGCTACTGTTATATTATTAGCAGATGCACAAATTTTGGTTGCGAACATTGGTGACTCAAAGGCTTTCTTGTGCTCTGAAAAATTTCAGTCACCTGCAGAGGCTAAAGCCACCTTTTTAAGGTTATACAAGCAAAAAAGATATAGCGGCGCTTCACGTGCAAGGGGCTATGGAAATTCTAGACCAGATTCATATGATGGGCTGATGCATTTTTATGTCAAAGAATTGACTAGAGATCATCATCCAGATAGAGAGGATGAAAGATCTAGGGTGGAGATTGCTGGGGGTCATGTTGTTGATTGGGGTGGTGTACCGAGAGTAAATGGTCAGTTGGCTATAACCAGAGCAATTGGTGATGTGTCTTTTAAAAGCTATGGGGTTATATCTGCACCAGAGGTGACTGATTGGCAACCTTTGTCTCCCAACGATAGCTATTTGGTGGCTTCATCTGATGGCATTTTTGAGAAACTGAGCCCACAAGATGTTTGTGACTTGTTGTGGGAAATAAACAATGATGGTATATCAAGTTCCGAACATTCTCCTTCATGCTCATACTCACTGGCGGATTGCATTGTTAGCACTGCCTTTGAACGGGGAAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGACCTGCTAGTTCTTCTCGGAGATTTCAGGAGGGGAGCTTTGTTGCACAGAGAGACTCAAGTTTTCCCATATCTGGAATAGAAAATCTTATTAAAGAGCACTCAGGCAAGGGTGTCTCTTCCAGTGCTGTGCAGTTGGAGCATTCTCATCCAGTTATGTCCAAGTTCAACAGATTATTAGTTGAAGGAAAGCACAATAATCTGGGATGTTTTTATCTGTCTGAGAATCTGGATGAATACAAGGATTACATGTTGCGAACTCAAAATGAAGAAGAAGAATATTTATGTGATCTACCCCATGCTCTTCCAGAATCCCTTAATCAGCTATATGGTGGATCTGTCAATGTGTACACTGACCAAAGCTTGTGCTTTCATCTTGGAATGATTGGAGCCAATGGCCAGTGCTTTAATCCTGAAGGCTTTGCTAGTTTTATTGGATTGCTTGAATCAATTCCTTTTCACGATCCTGGTCCAGATTATCAACTATTTGAGCATTCACCACCTGTATTGAGGTATTTGTTGAAGAAAAGGTTTGCTCGTGGTTCCTATGGTGAAGTATGGCTGGCTTTTCACGGGAATTGCCAGGAAGCGTTTAGTGCAGTAGGAGAGAATGCTAACGTTTCGTGCAACTCATCTTTTGGAGACACCAATGCCAGAAATTATAGCTGCTCTTCAAATAGTTCTCAAGGCTATGCTCTGGATGATAACTTGTTCATCATGAAGCGTGTTATGGTTGAAAGAGGTGCTGGAGTCTATTTGAGTGGCTTACGGGAGAAATATTTTGGTGAAATATTTTTGAATGCTTCTACATGCCTTGGAGATGTGTTGTCGACGGGAACTTCAAACTTTGTCTTTGAAGAATCACCACGGGAACCTAAAGATTTATTGACAAATGATGAATCACTGGGTTACACCGTAGGGGAAACTAGGCATTTTAAAAATATTTCTCCGAATTGGTTTAGACCAAAGGGAGTTGTCTATGAAGAAGGTTTAAATCATATTGTGAGATATGTAGAATCTTTTGAATCTCGGTCTAATGAAATATGGCTTGTATTTCATTACGAAGGGACGTCCCTCTCGAAGCTCATATATTCTATTGAAAATGCTGATGAAGAAAAAGTTGAGCAAAAAAACCATGTTCAAATATTACGACCTTCTAAGTGGTGGCGTTGGTTGAAAACAACAGAAGCAGGACAAGAGGAGATGAAAAATTTGATACGTCAATTGTTGATGGCACTCAAGTCTTGTCATGACCGCAATATCACTCACAGGGATATTAAACCTGAGAACATGGTGATATGCTTTGAAGATCAGGCTACTGGAAAATGCTTGAATGGAAGTCAAAGGGGAGATGAGAACTTCTCTACGAAAATGCGGATTATTGACTTTGGTAGTGCTATTGATGAATTCACACTTAAGCATCTTTATGGATCTATGGGACCTTCTAGAGCGGAACAGACTTATGATTACACACCTCCTGAAGCCTTGCTTAATTCAAGTTGGTATGATATGTGGAGCGTTGGTGTAGTGATGTTAGAATTGATCTTAGGATCACCCAATGTTTTTCAGGTAAGTGATTTAACCCGTGTTCTTTTGGACCAGCATCTTCAAGGCTGGAATGAAGGCTTAAAGCAGCTAGCATACAAAGGGTTCCTCAGTAGTTGTGGTACTCATGACTTTGGGAACTTTTTGATTGTTGCTGCTATATTAGTTCTTGAAACTGTGGTCCTCCTTTCTCAAGGAGGTTCACCAGCATCCTGGAAATGCTCCGAAGAAGTTTTTGCCCACCAGATAAAGAGTAGAGATCCTCTTAAACTAGGGTCGGTTTCCAAATGTTTGGGCTCTGCGATTGGTCCGCAATCTACTACAATGGAATCCGATGTATTCCTCCATCAATGTCATCGGTGTAGTATGGTGCGGAATTCTGGGCCAGATAGTGAGGACCGTTTAAATGTCGACGATGCTTTGCAACACCCTTATTTCCACCCTTCTCCTAAAGGAGGATGA 3327 41.33 MAFQNIEVTHFYTVLLWFMVYAITHCFAESSTCLMVYKEGGAPAVFQSPKCPLWKLSDYTFQPPNAPPCQIAMHQGRRKYQEDRTLCALDVRIPFPSKTGLKEVPVGIIAVFDGHNGAEASEMASKILLEYFVVHTYFLLDATYSGIFKRSIKTSSNEREHCTLFNQLSWSDKISNLDLELGRLKYLLPADFEDDFHLEILKEALLRAIQDIDKTFSKEAHKNNLVSGSTATVILLADAQILVANIGDSKAFLCSEKFQSPAEAKATFLRLYKQKRYSGASRARGYGNSRPDSYDGLMHFYVKELTRDHHPDREDERSRVEIAGGHVVDWGGVPRVNGQLAITRAIGDVSFKSYGVISAPEVTDWQPLSPNDSYLVASSDGIFEKLSPQDVCDLLWEINNDGISSSEHSPSCSYSLADCIVSTAFERGSMDNMAAIVVPLRPASSSRRFQEGSFVAQRDSSFPISGIENLIKEHSGKGVSSSAVQLEHSHPVMSKFNRLLVEGKHNNLGCFYLSENLDEYKDYMLRTQNEEEEYLCDLPHALPESLNQLYGGSVNVYTDQSLCFHLGMIGANGQCFNPEGFASFIGLLESIPFHDPGPDYQLFEHSPPVLRYLLKKRFARGSYGEVWLAFHGNCQEAFSAVGENANVSCNSSFGDTNARNYSCSSNSSQGYALDDNLFIMKRVMVERGAGVYLSGLREKYFGEIFLNASTCLGDVLSTGTSNFVFEESPREPKDLLTNDESLGYTVGETRHFKNISPNWFRPKGVVYEEGLNHIVRYVESFESRSNEIWLVFHYEGTSLSKLIYSIENADEEKVEQKNHVQILRPSKWWRWLKTTEAGQEEMKNLIRQLLMALKSCHDRNITHRDIKPENMVICFEDQATGKCLNGSQRGDENFSTKMRIIDFGSAIDEFTLKHLYGSMGPSRAEQTYDYTPPEALLNSSWYDMWSVGVVMLELILGSPNVFQVSDLTRVLLDQHLQGWNEGLKQLAYKGFLSSCGTHDFGNFLIVAAILVLETVVLLSQGGSPASWKCSEEVFAHQIKSRDPLKLGSVSKCLGSAIGPQSTTMESDVFLHQCHRCSMVRNSGPDSEDRLNVDDALQHPYFHPSPKGG 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 482117 503861 - ClCG07G000490.2 Cla07g00046 276034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00046 1108 PANTHER ALPHABET, ISOFORM E-RELATED 20 598 - -
Cla07g00046 1108 Gene3D - 64 447 IPR036457 -
Cla07g00046 1108 Pfam Protein phosphatase 2C 201 433 IPR001932 -
Cla07g00046 1108 CDD PP2Cc 75 440 IPR001932 -
Cla07g00046 1108 SUPERFAMILY PP2C-like 68 441 IPR036457 -
Cla07g00046 1108 Pfam Protein kinase domain 772 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00046 1108 Gene3D Transferase(Phosphotransferase) domain 1 826 1102 - -
Cla07g00046 1108 SUPERFAMILY Protein kinase-like (PK-like) 773 1103 IPR011009 -
Cla07g00046 1108 ProSiteProfiles Protein kinase domain profile. 612 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00046 1108 ProSitePatterns Serine/Threonine protein kinases active-site signature. 861 873 IPR008271 GO:0004672|GO:0006468
Cla07g00046 1108 SMART PP2C_4 62 438 IPR001932 -
Cla07g00046 1108 SMART serkin_6 612 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00046 1108 PANTHER PROTEIN PHOSPHATASE 2C 50-RELATED 20 598 - -
Cla07g00046 1108 ProSiteProfiles PPM-type phosphatase domain profile. 68 440 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00046 Cla-Chr7:482117 Cla03g00058 Cla-Chr3:625743 6.22E-21 dispersed
Cla07g00046 Cla-Chr7:482117 Cla03g00118 Cla-Chr3:1202141 1.87E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80666 PF00481 PP2C 1.30E-35 CL0238 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00046 - - csv:101210198 1882.46