Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g00057 | ATGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCCTCCCCCACCCAAGGCAGAAGTGGTGGGTTGGCCACCAATAAGGTCATATAGGAAGAAGAGGTTGGGGGCTGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGGTTTGTGAAGGTTAGCCTTGAAGGTGCACCTTATCTTCGTAAGGTCGACTTGAACATGTTCAACAGCTACACTCAACTTTCCCATGCCTTGGCCAAATTCTTTGCTGCCTTCACCATTGGTAATTGTGGGATGAAAGACTTCATGAATGAAACCAAACTAATAGATCTATTGAATGGTTCTGATTATGTTCCAACCTATCAAGACAAAGATGGTGATTGGATGCTTCTTGGTGATGTTCCATGGCACATAACATGCAGTTGCCCATTATGGAATAAATGTATTTTGCTTTATTTCTCTATGAGCTTGCTTGCAATACGCGGTGTTAGTCCAAATCACCAAAAGAGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTGCTGTAATTAGTAGTATTCAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACGTAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCCCTGTTGAATCTGGGAAGGATGAAGAGCAAAATGGTTTTAATTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTAATGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATGACAATGATCGATCATCAGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTGCCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAACGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGTAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCTTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTTGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACGGTCGCATTTATTGGTAATGAAGGCTACATCCTACTAGTGTCAACCAAAACCAAGGAGCTCATTGGAACACTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCCGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAACGTGCATACACAAGGGTGTCGAGGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCATTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATCATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTGGGAAATGCTGCTGGAAAGTACAAGAAGAGCAATAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTAATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACAACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCAGCCCTGAAAGTGGTTCCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGAAATGTAATGTTCTATGTGGCAGCTAG | 3357 | 41.85 | MSFEETELRLGLPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSPPPPKAEVVGWPPIRSYRKKRLGAVQKGSKEEEISDEEKKVVKVRFVKVSLEGAPYLRKVDLNMFNSYTQLSHALAKFFAAFTIGNCGMKDFMNETKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWHITCSCPLWNKCILLYFSMSLLAIRGVSPNHQKRADWKMSLISQNVAVISSIQKVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKERKKEDEQQKEIKKLENFLFGSLYSPVESGKDEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDDNDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRTCIHKGVEEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKYKKSNNNVCGIEILASEMAGDGFVIPVESQVSSVKKKKKTTTTTTKKKNTAISTSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEVLLRDPMDENVVPIVEELQRRLPSTNSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGSPESGSGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQKCNVLCGS | 1118 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 625087 | 643379 | + | ClCG07G000600.2 | Cla07g00057 | 276045 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g00057 | 1118 | Coils | Coil | 263 | 291 | - | - | |
Cla07g00057 | 1118 | Coils | Coil | 981 | 1008 | - | - | |
Cla07g00057 | 1118 | MobiDBLite | consensus disorder prediction | 908 | 929 | - | - | |
Cla07g00057 | 1118 | Gene3D | - | 96 | 195 | - | - | |
Cla07g00057 | 1118 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 608 | 649 | IPR001680 | GO:0005515 | |
Cla07g00057 | 1118 | MobiDBLite | consensus disorder prediction | 243 | 282 | - | - | |
Cla07g00057 | 1118 | Gene3D | Magnesium transport protein CorA, transmembrane region | 892 | 1108 | - | - | |
Cla07g00057 | 1118 | Pfam | AUX/IAA family | 47 | 185 | IPR033389 | - | |
Cla07g00057 | 1118 | PANTHER | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 18 HOMOLOG | 267 | 772 | - | - | |
Cla07g00057 | 1118 | MobiDBLite | consensus disorder prediction | 243 | 262 | - | - | |
Cla07g00057 | 1118 | PANTHER | WD-REPEAT PROTEIN-RELATED | 267 | 772 | IPR045161 | GO:0006364 | |
Cla07g00057 | 1118 | MobiDBLite | consensus disorder prediction | 263 | 282 | - | - | |
Cla07g00057 | 1118 | ProSiteProfiles | PB1 domain profile. | 101 | 203 | IPR000270 | GO:0005515 | |
Cla07g00057 | 1118 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 608 | 643 | - | - | |
Cla07g00057 | 1118 | MobiDBLite | consensus disorder prediction | 403 | 428 | - | - | |
Cla07g00057 | 1118 | Gene3D | - | 460 | 774 | IPR015943 | GO:0005515 | |
Cla07g00057 | 1118 | Gene3D | - | 810 | 886 | - | - | |
Cla07g00057 | 1118 | SMART | WD40_4 | 602 | 640 | IPR001680 | GO:0005515 | |
Cla07g00057 | 1118 | SMART | WD40_4 | 470 | 510 | IPR001680 | GO:0005515 | |
Cla07g00057 | 1118 | SMART | WD40_4 | 643 | 683 | IPR001680 | GO:0005515 | |
Cla07g00057 | 1118 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cla07g00057 | 1118 | CDD | Mrs2_Mfm1p-like | 828 | 1110 | IPR039204 | - | |
Cla07g00057 | 1118 | SUPERFAMILY | WD40 repeat-like | 481 | 772 | IPR036322 | GO:0005515 | |
Cla07g00057 | 1118 | SUPERFAMILY | CAD & PB1 domains | 103 | 189 | - | - | |
Cla07g00057 | 1118 | Pfam | WD domain, G-beta repeat | 656 | 683 | IPR001680 | GO:0005515 | |
Cla07g00057 | 1118 | Pfam | WD domain, G-beta repeat | 606 | 640 | IPR001680 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla07g00057 | Cla-Chr7:625087 | Cla10g01225 | Cla-Chr10:26930061 | 3.47E-41 | dispersed | |
Cla02g00695 | Cla-Chr2:8172424 | Cla07g00057 | Cla-Chr7:625087 | 8.46E-52 | transposed | |
Cla02g01202 | Cla-Chr2:25576414 | Cla07g00057 | Cla-Chr7:625087 | 0 | transposed | |
Cla06g00628 | Cla-Chr6:7704903 | Cla07g00057 | Cla-Chr7:625087 | 2.59E-117 | wgd | |
Cla07g00057 | Cla-Chr7:625087 | Cla09g00698 | Cla-Chr9:6792369 | 5.79E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61357 | PF02309 | AUX_IAA | 1.60E-52 | CL0072 | Cla | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g00057 | K14553 | - | csv:101208908 | 932.939 |