Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00057 ATGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCCTCCCCCACCCAAGGCAGAAGTGGTGGGTTGGCCACCAATAAGGTCATATAGGAAGAAGAGGTTGGGGGCTGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGGTTTGTGAAGGTTAGCCTTGAAGGTGCACCTTATCTTCGTAAGGTCGACTTGAACATGTTCAACAGCTACACTCAACTTTCCCATGCCTTGGCCAAATTCTTTGCTGCCTTCACCATTGGTAATTGTGGGATGAAAGACTTCATGAATGAAACCAAACTAATAGATCTATTGAATGGTTCTGATTATGTTCCAACCTATCAAGACAAAGATGGTGATTGGATGCTTCTTGGTGATGTTCCATGGCACATAACATGCAGTTGCCCATTATGGAATAAATGTATTTTGCTTTATTTCTCTATGAGCTTGCTTGCAATACGCGGTGTTAGTCCAAATCACCAAAAGAGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTGCTGTAATTAGTAGTATTCAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACGTAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCCCTGTTGAATCTGGGAAGGATGAAGAGCAAAATGGTTTTAATTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTAATGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATGACAATGATCGATCATCAGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTGCCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAACGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGTAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCTTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTTGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACGGTCGCATTTATTGGTAATGAAGGCTACATCCTACTAGTGTCAACCAAAACCAAGGAGCTCATTGGAACACTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCCGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAACGTGCATACACAAGGGTGTCGAGGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCATTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATCATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTGGGAAATGCTGCTGGAAAGTACAAGAAGAGCAATAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTAATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACAACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCAGCCCTGAAAGTGGTTCCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGAAATGTAATGTTCTATGTGGCAGCTAG 3357 41.85 MSFEETELRLGLPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSPPPPKAEVVGWPPIRSYRKKRLGAVQKGSKEEEISDEEKKVVKVRFVKVSLEGAPYLRKVDLNMFNSYTQLSHALAKFFAAFTIGNCGMKDFMNETKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWHITCSCPLWNKCILLYFSMSLLAIRGVSPNHQKRADWKMSLISQNVAVISSIQKVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKERKKEDEQQKEIKKLENFLFGSLYSPVESGKDEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDDNDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRTCIHKGVEEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKYKKSNNNVCGIEILASEMAGDGFVIPVESQVSSVKKKKKTTTTTTKKKNTAISTSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEVLLRDPMDENVVPIVEELQRRLPSTNSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGSPESGSGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQKCNVLCGS 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 625087 643379 + ClCG07G000600.2 Cla07g00057 276045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00057 1118 Coils Coil 263 291 - -
Cla07g00057 1118 Coils Coil 981 1008 - -
Cla07g00057 1118 MobiDBLite consensus disorder prediction 908 929 - -
Cla07g00057 1118 Gene3D - 96 195 - -
Cla07g00057 1118 ProSiteProfiles Trp-Asp (WD) repeats profile. 608 649 IPR001680 GO:0005515
Cla07g00057 1118 MobiDBLite consensus disorder prediction 243 282 - -
Cla07g00057 1118 Gene3D Magnesium transport protein CorA, transmembrane region 892 1108 - -
Cla07g00057 1118 Pfam AUX/IAA family 47 185 IPR033389 -
Cla07g00057 1118 PANTHER U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 18 HOMOLOG 267 772 - -
Cla07g00057 1118 MobiDBLite consensus disorder prediction 243 262 - -
Cla07g00057 1118 PANTHER WD-REPEAT PROTEIN-RELATED 267 772 IPR045161 GO:0006364
Cla07g00057 1118 MobiDBLite consensus disorder prediction 263 282 - -
Cla07g00057 1118 ProSiteProfiles PB1 domain profile. 101 203 IPR000270 GO:0005515
Cla07g00057 1118 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 608 643 - -
Cla07g00057 1118 MobiDBLite consensus disorder prediction 403 428 - -
Cla07g00057 1118 Gene3D - 460 774 IPR015943 GO:0005515
Cla07g00057 1118 Gene3D - 810 886 - -
Cla07g00057 1118 SMART WD40_4 602 640 IPR001680 GO:0005515
Cla07g00057 1118 SMART WD40_4 470 510 IPR001680 GO:0005515
Cla07g00057 1118 SMART WD40_4 643 683 IPR001680 GO:0005515
Cla07g00057 1118 MobiDBLite consensus disorder prediction 1 22 - -
Cla07g00057 1118 CDD Mrs2_Mfm1p-like 828 1110 IPR039204 -
Cla07g00057 1118 SUPERFAMILY WD40 repeat-like 481 772 IPR036322 GO:0005515
Cla07g00057 1118 SUPERFAMILY CAD & PB1 domains 103 189 - -
Cla07g00057 1118 Pfam WD domain, G-beta repeat 656 683 IPR001680 GO:0005515
Cla07g00057 1118 Pfam WD domain, G-beta repeat 606 640 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00057 K14553 UTP18; U3 small nucleolar RNA-associated protein 18 - csv:101208908 932.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00057 Cla-Chr7:625087 Cla10g01225 Cla-Chr10:26930061 3.47E-41 dispersed
Cla02g00695 Cla-Chr2:8172424 Cla07g00057 Cla-Chr7:625087 8.46E-52 transposed
Cla02g01202 Cla-Chr2:25576414 Cla07g00057 Cla-Chr7:625087 0 transposed
Cla06g00628 Cla-Chr6:7704903 Cla07g00057 Cla-Chr7:625087 2.59E-117 wgd
Cla07g00057 Cla-Chr7:625087 Cla09g00698 Cla-Chr9:6792369 5.79E-51 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01225 . 1 458 MRS2 Gene Family AT1G16010 79.3 7.2e-191 663.7
Cla08g01046 . 129 520 MRS2 Gene Family AT1G16010 51.9 5.3e-109 391.7
Cla06g00628 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.4e-158 556.2
Cla07g00057 . 790 1110 MRS2 Gene Family AT5G64560 66.7 2.1e-106 382.9
Cla02g00695 . 14 501 MRS2 Gene Family AT3G19640 64.4 5.3e-155 544.7
Cla05g01020 . 59 442 MRS2 Gene Family AT3G58970 70.3 7.9e-142 500.7
Cla02g00024 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.4e-116 415.2
Cla08g01046 . 146 520 MRS2 Gene Family AT2G03620 68.4 4.4e-137 485.0
Cla10g01225 . 13 458 MRS2 Gene Family AT2G03620 50.9 1.7e-104 376.7
Cla05g01020 . 59 441 MRS2 Gene Family AT4G28580 50.4 1.1e-92 337.4
Cla06g00628 . 1 327 MRS2 Gene Family AT5G09690 76.1 4.1e-127 451.4
Cla07g00057 . 790 1110 MRS2 Gene Family AT5G09690 62.1 2.3e-101 365.9
Cla06g00628 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.8e-89 326.2
Cla07g00057 . 825 1073 MRS2 Gene Family AT5G09720 59.0 9.3e-70 260.8
Cla10g01225 . 1 458 MRS2 Gene Family AT1G80900 78.6 2.2e-187 652.1
Cla08g01046 . 129 520 MRS2 Gene Family AT1G80900 53.4 1.7e-107 386.7
Cla01g01385 . 16 455 MRS2 Gene Family AT5G22830 68.8 2.4e-157 552.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002983 1 10 1 1 1 1 2 2 2 1 2 2 2 1 0 2 2 2 2 2 1 1 0 2 0 2 1 1 1 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61357 PF02309 AUX_IAA 1.60E-52 CL0072 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00057 Cla_Chr07 FPKM 3.043659 3.43199 1.910096 2.01408 1.447756 2.015532 1.369006 2.513426 3.689565 3.881087