Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00057 ATGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCCTCCCCCACCCAAGGCAGAAGTGGTGGGTTGGCCACCAATAAGGTCATATAGGAAGAAGAGGTTGGGGGCTGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGGTTTGTGAAGGTTAGCCTTGAAGGTGCACCTTATCTTCGTAAGGTCGACTTGAACATGTTCAACAGCTACACTCAACTTTCCCATGCCTTGGCCAAATTCTTTGCTGCCTTCACCATTGGTAATTGTGGGATGAAAGACTTCATGAATGAAACCAAACTAATAGATCTATTGAATGGTTCTGATTATGTTCCAACCTATCAAGACAAAGATGGTGATTGGATGCTTCTTGGTGATGTTCCATGGCACATAACATGCAGTTGCCCATTATGGAATAAATGTATTTTGCTTTATTTCTCTATGAGCTTGCTTGCAATACGCGGTGTTAGTCCAAATCACCAAAAGAGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTGCTGTAATTAGTAGTATTCAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACGTAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCCCTGTTGAATCTGGGAAGGATGAAGAGCAAAATGGTTTTAATTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTAATGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATGACAATGATCGATCATCAGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTGCCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAACGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGTAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCTTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTTGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACGGTCGCATTTATTGGTAATGAAGGCTACATCCTACTAGTGTCAACCAAAACCAAGGAGCTCATTGGAACACTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCCGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAACGTGCATACACAAGGGTGTCGAGGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCATTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATCATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTGGGAAATGCTGCTGGAAAGTACAAGAAGAGCAATAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTAATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACAACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCAGCCCTGAAAGTGGTTCCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGAAATGTAATGTTCTATGTGGCAGCTAG 3357 41.85 MSFEETELRLGLPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSPPPPKAEVVGWPPIRSYRKKRLGAVQKGSKEEEISDEEKKVVKVRFVKVSLEGAPYLRKVDLNMFNSYTQLSHALAKFFAAFTIGNCGMKDFMNETKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWHITCSCPLWNKCILLYFSMSLLAIRGVSPNHQKRADWKMSLISQNVAVISSIQKVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKERKKEDEQQKEIKKLENFLFGSLYSPVESGKDEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDDNDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRTCIHKGVEEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKYKKSNNNVCGIEILASEMAGDGFVIPVESQVSSVKKKKKTTTTTTKKKNTAISTSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEVLLRDPMDENVVPIVEELQRRLPSTNSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGSPESGSGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQKCNVLCGS 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 625087 643379 + ClCG07G000600.2 Cla07g00057 276045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00057 1118 Coils Coil 263 291 - -
Cla07g00057 1118 Coils Coil 981 1008 - -
Cla07g00057 1118 MobiDBLite consensus disorder prediction 908 929 - -
Cla07g00057 1118 Gene3D - 96 195 - -
Cla07g00057 1118 ProSiteProfiles Trp-Asp (WD) repeats profile. 608 649 IPR001680 GO:0005515
Cla07g00057 1118 MobiDBLite consensus disorder prediction 243 282 - -
Cla07g00057 1118 Gene3D Magnesium transport protein CorA, transmembrane region 892 1108 - -
Cla07g00057 1118 Pfam AUX/IAA family 47 185 IPR033389 -
Cla07g00057 1118 PANTHER U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 18 HOMOLOG 267 772 - -
Cla07g00057 1118 MobiDBLite consensus disorder prediction 243 262 - -
Cla07g00057 1118 PANTHER WD-REPEAT PROTEIN-RELATED 267 772 IPR045161 GO:0006364
Cla07g00057 1118 MobiDBLite consensus disorder prediction 263 282 - -
Cla07g00057 1118 ProSiteProfiles PB1 domain profile. 101 203 IPR000270 GO:0005515
Cla07g00057 1118 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 608 643 - -
Cla07g00057 1118 MobiDBLite consensus disorder prediction 403 428 - -
Cla07g00057 1118 Gene3D - 460 774 IPR015943 GO:0005515
Cla07g00057 1118 Gene3D - 810 886 - -
Cla07g00057 1118 SMART WD40_4 602 640 IPR001680 GO:0005515
Cla07g00057 1118 SMART WD40_4 470 510 IPR001680 GO:0005515
Cla07g00057 1118 SMART WD40_4 643 683 IPR001680 GO:0005515
Cla07g00057 1118 MobiDBLite consensus disorder prediction 1 22 - -
Cla07g00057 1118 CDD Mrs2_Mfm1p-like 828 1110 IPR039204 -
Cla07g00057 1118 SUPERFAMILY WD40 repeat-like 481 772 IPR036322 GO:0005515
Cla07g00057 1118 SUPERFAMILY CAD & PB1 domains 103 189 - -
Cla07g00057 1118 Pfam WD domain, G-beta repeat 656 683 IPR001680 GO:0005515
Cla07g00057 1118 Pfam WD domain, G-beta repeat 606 640 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00057 Cla-Chr7:625087 Cla10g01225 Cla-Chr10:26930061 3.47E-41 dispersed
Cla02g00695 Cla-Chr2:8172424 Cla07g00057 Cla-Chr7:625087 8.46E-52 transposed
Cla02g01202 Cla-Chr2:25576414 Cla07g00057 Cla-Chr7:625087 0 transposed
Cla06g00628 Cla-Chr6:7704903 Cla07g00057 Cla-Chr7:625087 2.59E-117 wgd
Cla07g00057 Cla-Chr7:625087 Cla09g00698 Cla-Chr9:6792369 5.79E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61357 PF02309 AUX_IAA 1.60E-52 CL0072 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00057 K14553 - csv:101208908 932.939