Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00086 ATGGCTTCTTCTTCTTCCTCTTCCTCTGCAAATACTAGTGTGTCAGGCAGTGGCGGTGGCGGTGGCAGTGGCTCGCCTTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATTTTTGCTCCTTACTTTTGCTCAGAGCAAGGGGCTGCAAGATTTGCTGCCATTCATAAAGTGTTTGGTGCAAGTAATGTTTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCATGATCCTGTTTATGGATGTGTTGCTCATATTTTTGCGCTCCAACAACAGGTGGCATATTTACAAACACAGCTAATGCAAGCCAAGGCTCAACTTGCACAAACCCTGATGGATTCAGGAGGTAATATGGAGATTCAATGGACAGGCAATTTCAATAACAATCTCTTCAATGGAATTCCAAATAATTATCAAACTCAGATTATGAACAACCCAGCAGTTTCCCCTCAGAGTTCTTTAGAATCAGCTGCCAACAATGATGAAGCTTTATTATTCATAAATAATCAAAATCACCTTCATGAAAGCCAAAGCAGATCACCAGAAGAATCTCAATTTCTTCAACCATTTCCTAGAAAAAAATTGCCTTCTTCTCATGCTGATCTTGGGGAACTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAA 708 40.82 MASSSSSSSANTSVSGSGGGGGSGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMQAKAQLAQTLMDSGGNMEIQWTGNFNNNLFNGIPNNYQTQIMNNPAVSPQSSLESAANNDEALLFINNQNHLHESQSRSPEESQFLQPFPRKKLPSSHADLGELQALALRMMRN 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 976436 977836 + ClCG07G000920.1 Cla07g00086 276074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00086 235 MobiDBLite consensus disorder prediction 1 24 - -
Cla07g00086 235 MobiDBLite consensus disorder prediction 193 219 - -
Cla07g00086 235 Pfam Lateral organ boundaries (LOB) domain 26 124 IPR004883 -
Cla07g00086 235 MobiDBLite consensus disorder prediction 1 20 - -
Cla07g00086 235 ProSiteProfiles LOB domain profile. 25 127 IPR004883 -
Cla07g00086 235 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 234 - -
Cla07g00086 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 13 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00031 Cla-Chr6:357930 Cla07g00086 Cla-Chr7:976436 6.04E-55 dispersed
Cla07g00086 Cla-Chr7:976436 Cla10g01510 Cla-Chr10:30343813 6.63E-53 dispersed
Cla07g00086 Cla-Chr7:976436 Cla07g00087 Cla-Chr7:988887 8.39E-60 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61362 PF03195 LOB 2.70E-36 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00086 K13944 - csv:101214521 367.851