Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla07g00087 | ATGACGGGCTCAGGTTCTCCTTGTGGAGCTTGTAAATTCTTGAGAAGAAAATGTGTTAGAGGATGTGTTTTTGCACCATATTTTTGCCATGAACAAGGAGCTACTCATTTTGCTGCCATTCATAAAGTGTTTGGAGCTAGTAATGTTTCTAAGCTTCTTGCTCGTCTTCCTATTAGTGAAAGATGTGAGGCTGCTGTTACTATTTCTTATGAGGCTCAAGCTAGGCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTTGTGAGTCTTCAAGCACAACTTGCTTCTTTGAAGGAACAAGCAGCGGAAAGCATTATGAATGCATCTGGTAACGGGGGCGGAGTGAATGAAAAGATTAATAATAGAAAGGTTCCTTCTCATCCCCAAGATCTCCATAGTTGGTTTCAATCGGAGCAACCAAACGTAACACTCGAGTTCAATCCGAATCCAACTCCGAATAATAATTCAGCATCAAACCCTTATTATGATGAGAATTATTGCATTATGGTTAATTCACAATCCAATGGGAACTATGAACATCACATGACTAAAATGGAGGAAAGTGGATCATATGGGAGCTATGAAGAAACCTCAGGCTATTCCATGTACACTCTTGATCAATTGCATTCAAATGTTCAACAATGGAGCTTCAATAAGTCTGCTGATGATTTACAATCTGTTGCTTTTGGCAATAGACATTGGTGA | 726 | 39.67 | MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPISERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESIMNASGNGGGVNEKINNRKVPSHPQDLHSWFQSEQPNVTLEFNPNPTPNNNSASNPYYDENYCIMVNSQSNGNYEHHMTKMEESGSYGSYEETSGYSMYTLDQLHSNVQQWSFNKSADDLQSVAFGNRHW | 241 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 988887 | 990115 | - | ClCG07G000930.1 | Cla07g00087 | 276075 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla07g00087 | 241 | Coils | Coil | 87 | 114 | - | - | |
| Cla07g00087 | 241 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 238 | - | - | |
| Cla07g00087 | 241 | ProSiteProfiles | LOB domain profile. | 6 | 108 | IPR004883 | - | |
| Cla07g00087 | 241 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 105 | IPR004883 | - | |
| Cla07g00087 | 241 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 238 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla06g00032 | Cla-Chr6:375668 | Cla07g00087 | Cla-Chr7:988887 | 8.57E-48 | dispersed | |
| Cla07g00087 | Cla-Chr7:988887 | Cla09g00749 | Cla-Chr9:7412634 | 2.64E-61 | dispersed | |
| Cla07g00086 | Cla-Chr7:976436 | Cla07g00087 | Cla-Chr7:988887 | 8.39E-60 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61363 | PF03195 | LOB | 1.00E-35 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla07g00087 | K13945 | - | csv:101214764 | 422.165 |