Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00087 ATGACGGGCTCAGGTTCTCCTTGTGGAGCTTGTAAATTCTTGAGAAGAAAATGTGTTAGAGGATGTGTTTTTGCACCATATTTTTGCCATGAACAAGGAGCTACTCATTTTGCTGCCATTCATAAAGTGTTTGGAGCTAGTAATGTTTCTAAGCTTCTTGCTCGTCTTCCTATTAGTGAAAGATGTGAGGCTGCTGTTACTATTTCTTATGAGGCTCAAGCTAGGCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTTGTGAGTCTTCAAGCACAACTTGCTTCTTTGAAGGAACAAGCAGCGGAAAGCATTATGAATGCATCTGGTAACGGGGGCGGAGTGAATGAAAAGATTAATAATAGAAAGGTTCCTTCTCATCCCCAAGATCTCCATAGTTGGTTTCAATCGGAGCAACCAAACGTAACACTCGAGTTCAATCCGAATCCAACTCCGAATAATAATTCAGCATCAAACCCTTATTATGATGAGAATTATTGCATTATGGTTAATTCACAATCCAATGGGAACTATGAACATCACATGACTAAAATGGAGGAAAGTGGATCATATGGGAGCTATGAAGAAACCTCAGGCTATTCCATGTACACTCTTGATCAATTGCATTCAAATGTTCAACAATGGAGCTTCAATAAGTCTGCTGATGATTTACAATCTGTTGCTTTTGGCAATAGACATTGGTGA 726 39.67 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPISERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESIMNASGNGGGVNEKINNRKVPSHPQDLHSWFQSEQPNVTLEFNPNPTPNNNSASNPYYDENYCIMVNSQSNGNYEHHMTKMEESGSYGSYEETSGYSMYTLDQLHSNVQQWSFNKSADDLQSVAFGNRHW 241
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 988887 990115 - ClCG07G000930.1 Cla07g00087 276075
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00087 241 Coils Coil 87 114 - -
Cla07g00087 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 238 - -
Cla07g00087 241 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Cla07g00087 241 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Cla07g00087 241 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 238 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00032 Cla-Chr6:375668 Cla07g00087 Cla-Chr7:988887 8.57E-48 dispersed
Cla07g00087 Cla-Chr7:988887 Cla09g00749 Cla-Chr9:7412634 2.64E-61 dispersed
Cla07g00086 Cla-Chr7:976436 Cla07g00087 Cla-Chr7:988887 8.39E-60 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61363 PF03195 LOB 1.00E-35 No_clan Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00087 K13945 - csv:101214764 422.165