Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00093 ATGGAATCCTCTTATTTTTCGTTTTCCGATTCGGATTTCTCGACGGAATCTTCATTCGGATCAGCGGAATCATCGTTCTCATGGAGTGAGTTTTTCTCGATTCACAGTACCCTAGAAAACTCAATCTCACTACACGGAGAATTTCTCGGGAATCAAACATCGGAATCGGAATCGAAAATTGTAGTGAAGGAAGAAACCGAAGTGAGTTCGATTGATTTCGAGGAGGAGAAAGAAAGGAAGACAACGGAGAAGAGTTACAGAGGAGTGAGACGGCGGCCGTGGGGGAAATACGCGGCGGAGATTAGGGATTCGACGAGACATGGAGTTAGGGTTTGGCTTGGAACTTTTGATAGCGCTGAAGCTGCGGCTTTAGCTTATGATCAAGCGGCATTTTCGATGAGAGGAGCAATGGCGGTGCTGAATTTTCCGGTGGAAATGGTGAGGGAATCACTGAAGGATATTAAGTATCAACTGGAAGAAGGATGTTCGCCGGTGGTGGCTTTGAAGAGGAAACACTCAATGAGAAGGAAATCGGCGGCGGCGGCGGTGAAAAGCCAAGGGGCGGCGGAGAAGAAGAAGATGAAGAAAAACAACAATGTGGTGATTTTAGAAGATTTGGGAACAGAGTATTTGGAGGAACTTTTGATGCTAAGTTCATGA 660 46.06 MESSYFSFSDSDFSTESSFGSAESSFSWSEFFSIHSTLENSISLHGEFLGNQTSESESKIVVKEETEVSSIDFEEEKERKTTEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAMAVLNFPVEMVRESLKDIKYQLEEGCSPVVALKRKHSMRRKSAAAAVKSQGAAEKKKMKKNNNVVILEDLGTEYLEELLMLSS 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1058226 1058885 + ClCG07G001000.1 Cla07g00093 276081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00093 219 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Cla07g00093 219 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Cla07g00093 219 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Cla07g00093 219 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Cla07g00093 219 CDD AP2 86 144 IPR001471 GO:0003700|GO:0006355
Cla07g00093 219 MobiDBLite consensus disorder prediction 1 21 - -
Cla07g00093 219 SUPERFAMILY DNA-binding domain 85 145 IPR016177 GO:0003677
Cla07g00093 219 PANTHER DNA-BINDING DOMAIN 45 217 IPR044808 GO:0003700|GO:0009873
Cla07g00093 219 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700|GO:0006355
Cla07g00093 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 45 217 - -
Cla07g00093 219 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g00093 Cla09g00720 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00093 Cla-Chr7:1058226 Cla09g00720 Cla-Chr9:7074746 1.92E-47 dispersed
Cla05g00451 Cla-Chr5:4029809 Cla07g00093 Cla-Chr7:1058226 1.53E-49 wgd
Cla06g00659 Cla-Chr6:8186126 Cla07g00093 Cla-Chr7:1058226 1.93E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61364 PF00847 AP2 1.20E-14 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00093 K14516 - csv:101220325 295.819