Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00114 ATGGAGCTCAAGAACGCCATGTTTAGGTCAAACAATATGAAGAGTGACGTTAAGATTAAAAGGGGGAGGAGCGCTGGAAAAAGGGAGAATATTAGGAAGATAATGAAGTGTTTATGTTCTGGAGAGAAAACAGCTGGGGATGATATGATTCCTGCAGCGGAATCGCCTTCTGCTTTCGAGAATTCAGGAAGTGGACGCTCTTCACGGACTGGGGAGATCGTCAAGAAGCCAGAAATTGGCAATATAGAAGAAGCTGAGTCTTCGCTTCGTGAGAGTGGTTGCTTAAATTATGAGGAAGCAAGAGCATTGCTAGGAAGATATGAATATCAAAAAGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATCACTGCTATAACTAGTAAGATAATGATCTCCATAGCTAGAAGAGGAGACCGTCCACAGAGACAATCACAGAATTTTACTGCCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGCCATCCTTCTGAAAGCAAAATCATTGCAAGGCCTTGGGAGGTTCGGAGTTTTGGGAATCTGTTTCTCTTGTCAAACCCTTCAATGTGATTTTTTGATGAAATGTCTTACAACTCTGGTGTTGAGTTTTGGTTGGAATATGAGGATTCACTGTGATTTTCATTTTTCTGGATTGTCTGTAAAAAGGGGAAAAGACGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAGGCCGTGGAGCTGCTACCAGAGTTATGGAAGCTAGCTGATGCTTCTCAAGAAGCGATCCTTTCATACCGGCGAGCACTTCTTCATCAGTGGAACCTTGATGCAGGAACCACTGCTCGAATCCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGATGTGAAGCTTGCCCTCCGAATCTCCGGTCCCAAATGGACAGCTCATTTGTACCAAAAAACAATATTGAAGAAGCTATACTCTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAGAGGATTGATTGGGATCCATCAATCTTGGATCATCTCTCCTTTGCTCTAACAATATCAGGGGATACAAGGGATTTAGCAGGTCAAATAGAGGAATTGCCTCCTGGGATTCTACATCGACAAGAAAGGTATCATGCTCTAGCTCTGTGTTACTATGGAGCGGGTGAAAACTTGACTGCTTTGAATCTGTTGAGGAAAGTGTTGGGTAATCATGAGGATCCTAAATCGATTCCTGCTTTATTGATGGCGTCGAAGATTTGTGGAGAGAACTGCGACCTTGCTGAAGAGGGAACGAGTTTTGCTCATAGAGCTCTTCAAAACTTGGATCATGGATGTGATCAATTGGAAGGTGTTGCCAATTGTTTGTTGGGTGTCTCACTGTCTGTATATTCTAAATCTGCCACTGCAGATTCCGAGAAGTCCACCAGACAATCTGAGGCAATTGAGGCCTTGGAAGCCGCACGGAAGACAACTAGAACAGCTGACCCTAATGTCCTCTATCATTTGAGTCTTGAATATGCTGACGAGAGGAAGTTAGATTCAGCACTTTATTATGCAAAGAAGTGTCTCAAGCTGGAAGGTGGATCTAATGTTAAAACTTGGTTACTACTGGCTAGAATTCTCTCTGCCCAAAAACGATTTACAGATAGCGAAAGTATTATAAATGCAGCTCTAGATCAGACAGGGAAATGGGAGCAAGCCGAGTTGCTTCAAACGAAAGCAAAGCTTCTAATTGCACAGGATGAGTTTAAAGGTGCTATTGAGACTTATAGTCAATTACTCGCTGTTTTTCAAGTTCAGAGTAAAAATTTCAGTTTGGGAGATAAGAAGCTACATAAGGTCTGTTTCTTCTATATTTTGAAAATGGTTTTCACTTATAGATATTTCAGGATTGTTATAGAAGCTAAATATATTAAGATTCTCCTAACTAATTACGACTATACCGTCAATATCCCTCTAAAACACTTATACCATTCCTATCGAATTGATTTTCATAGCAGCAGAAATCATGCTAGAAGATTGCAATTGGAAGTGTGGCATGATCTAGCTGTAGTCTACATAAGGCTCTCACAATGGCACGATGCCGAGGCCTGCCTTTCAAAGTCGAAGGCCATCTCTTCTCATTCGGCACCTAGATGCCACATTACAGGTATGCTTTATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGCTTTTATGGCTTCTCTGGACATTGATCCCGTTCATGTCCCGAGCTTGGTCTCATCTGCGGTGGTTATCAGACATCTTGGCCACCAATCGCATCCTGTCATTCGCAGCTTTTTGATGGATGCTCTACGGCTCGATCAAACGAACCATGCTGCGTGGTACAATCTTGGGCTATTCTACAAGTCTGAAGGAACCAAGTCTTCATTAGCAGAAGCTGTTGAATGTTTTGAGGCTGCAACTTTTCTTGAAGAGTCTGCTCCTGTTGAACCCTTTAGATAA 2544 41.71 MELKNAMFRSNNMKSDVKIKRGRSAGKRENIRKIMKCLCSGEKTAGDDMIPAAESPSAFENSGSGRSSRTGEIVKKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAITSKIMISIARRGDRPQRQSQNFTAPPMSMHAVSLLLEAILLKAKSLQGLGRFGVLGICFSCQTLQCDFLMKCLTTLVLSFGWNMRIHCDFHFSGLSVKRGKDEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLADASQEAILSYRRALLHQWNLDAGTTARIQKEFAIFLLYSGCEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALTISGDTRDLAGQIEELPPGILHRQERYHALALCYYGAGENLTALNLLRKVLGNHEDPKSIPALLMASKICGENCDLAEEGTSFAHRALQNLDHGCDQLEGVANCLLGVSLSVYSKSATADSEKSTRQSEAIEALEAARKTTRTADPNVLYHLSLEYADERKLDSALYYAKKCLKLEGGSNVKTWLLLARILSAQKRFTDSESIINAALDQTGKWEQAELLQTKAKLLIAQDEFKGAIETYSQLLAVFQVQSKNFSLGDKKLHKVCFFYILKMVFTYRYFRIVIEAKYIKILLTNYDYTVNIPLKHLYHSYRIDFHSSRNHARRLQLEVWHDLAVVYIRLSQWHDAEACLSKSKAISSHSAPRCHITGMLYEAKGLYKEALKAFMASLDIDPVHVPSLVSSAVVIRHLGHQSHPVIRSFLMDALRLDQTNHAAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEESAPVEPFR 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1347521 1351511 + ClCG07G001230.2 Cla07g00114 276102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00114 847 ProSiteProfiles TPR repeat profile. 735 768 IPR019734 GO:0005515
Cla07g00114 847 Pfam Tetratricopeptide repeat 533 598 - -
Cla07g00114 847 Gene3D Tetratricopeptide repeat domain 261 631 IPR011990 GO:0005515
Cla07g00114 847 PANTHER PROTEIN NPGR2 690 847 - -
Cla07g00114 847 Pfam Tetratricopeptide repeat 738 767 IPR019734 GO:0005515
Cla07g00114 847 Gene3D Tetratricopeptide repeat domain 689 841 IPR011990 GO:0005515
Cla07g00114 847 PANTHER PROTEIN NPG1 690 847 IPR043376 -
Cla07g00114 847 SMART tpr_5 701 734 IPR019734 GO:0005515
Cla07g00114 847 SMART tpr_5 399 432 IPR019734 GO:0005515
Cla07g00114 847 SMART tpr_5 521 554 IPR019734 GO:0005515
Cla07g00114 847 SMART tpr_5 735 768 IPR019734 GO:0005515
Cla07g00114 847 SMART tpr_5 556 589 IPR019734 GO:0005515
Cla07g00114 847 SMART tpr_5 805 841 IPR019734 GO:0005515
Cla07g00114 847 SMART tpr_5 592 625 IPR019734 GO:0005515
Cla07g00114 847 PANTHER PROTEIN NPGR2 25 182 - -
Cla07g00114 847 PANTHER PROTEIN NPGR2 231 637 - -
Cla07g00114 847 SUPERFAMILY TPR-like 503 774 IPR011990 GO:0005515
Cla07g00114 847 MobiDBLite consensus disorder prediction 53 79 - -
Cla07g00114 847 PANTHER PROTEIN NPG1 25 182 IPR043376 -
Cla07g00114 847 PANTHER PROTEIN NPG1 231 637 IPR043376 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00114 Cla-Chr7:1347521 Cla11g01623 Cla-Chr11:29915612 0 dispersed
Cla05g00427 Cla-Chr5:3816421 Cla07g00114 Cla-Chr7:1347521 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00114 K21843 - csv:101223229 1292.72