Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00136 ATGGCAGAAATGGCCTGCTCCGCTGCTGACCTTCACCACCTCCTCGGCGGCTCAGCCAACGCCACTGCCGTCGCGGAGTACATTTGCAGCCGATTCGATTCCATGTCGACGAAATTTGTCGACACAAGCTATGCGGTTGACAACACATACCTTCTGTTTTCAGCTTACCTTGTATTTGCAATGCAGCTTGGATTTGCAATGCTTTGTGCTGGGTCAGTTAGAGCCAAAAACACAATGAATATTATGTTAACTAATGTTCTCGATGCAGCTACTGGTGGAATATTTTATTATGTATTTGGGTTTGCTTTGGCATTTGGAACACCTTCAAATTCCTTCATTGGACACCATTATTTTGGACTCTCACAGTTTCCTTCTTCTTCATTTGATTATGGGTTCTTCCTTTTTCAATGGGCTTTTGCAATCGCTGCTGCTGGGATTACAAGTGGATCCATTGCTGAAAGAACTCAGTTTGTTGCCTATTTGATCTATTCCTCTGTTTTGACTGGTTGGGTATATCCAATCGTTTCTCATTGGTTTTGGTCGTCCGATGGGTGGGGAAGTGCCGCTCGGTCCGATAACCTCCTATTTGGGTCCGGCGTGATCGACTTCGCCGGCTCCGGCGTCGTCCACATGGTCGGCGGCATCGCCGGTTTATGGGGCGCCCTCATAGAAGGCCCTCGAATCGGCCGATTCGATCACGCCGGCCGCTCCGTCGCCCTCCGTGGCCACAGCGGCACATTGGTTGTTCTCGGCACTTTCCTCCTCTGGTTCGGCTGGTACGGCTTCAACCCCGGTTCATTTCTCAACATCCTCAAAGCCTACGGCCACCCCGCCGCCCCCTATTACGGCCAATGGAGCGCCATCGGCCGCACCGCCGTCACCACTACCCTCGCCGGCTGCACAGCAGCACTAACCACACTCTTCGGCAAACGCCTCCTCGTCGGCCACTGGAATGTCACCGATGTTTGCAACGGTTTATTAGGCGGATTCGCCGCCATAACCTCCGGTTGCGCGGTGGTGGATCCATGGGCAGCAATTGTGTGCGGGTTTGTCTCAGCCTGGGTTTTGATCGGATTGAACAAACTAGCGGAGAAAATGAAGTACGACGATCCACTAGAGGCGGCGCAATTGCACGGTGGTTGTGGAGCTTGGGGGATTTTGTTCACAGGGTTATTTGCAAAACAGGCTTATGTTAACGAGATTTATCCAGGGTTGCCGGAGAGGCCGTACGGGCTGTTGATGGGCGGCGGCGGGAGGTTGTTAGCGGCTCATTTAGTGCAAATTTTGTCGATTGTTGGTTGGGTTACTGTGACAATGGGGCTTGTTTTTTGGTTGTTGCATAAGTTTGAGTTGCTGAGGATTACGCCGGAGGAGGAGATGGCCGGAATGGACTTGACGAGCCACGGCGGTTTGGCTTATGTGTATAATGATGAAGAGAAGCTTTAA 1446 51.8 MAEMACSAADLHHLLGGSANATAVAEYICSRFDSMSTKFVDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNSFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGWVYPIVSHWFWSSDGWGSAARSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGHPAAPYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFVSAWVLIGLNKLAEKMKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYPGLPERPYGLLMGGGGRLLAAHLVQILSIVGWVTVTMGLVFWLLHKFELLRITPEEEMAGMDLTSHGGLAYVYNDEEKL 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1555244 1558128 + ClCG07G001470.1 Cla07g00136 276124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00136 481 TIGRFAM amt: ammonium transporter 47 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cla07g00136 481 PANTHER AMMONIUM TRANSPORTER 1 480 - -
Cla07g00136 481 Gene3D Ammonium transporter AmtB like domains 25 481 IPR029020 -
Cla07g00136 481 Pfam Ammonium Transporter Family 50 473 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cla07g00136 481 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cla07g00136 481 SUPERFAMILY Ammonium transporter 44 454 - -
Cla07g00136 481 PANTHER AMMONIUM TRANSPORTER 1 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00136 Cla-Chr7:1555244 Cla11g00998 Cla-Chr11:19217089 0 dispersed
Cla05g00396 Cla-Chr5:3596803 Cla07g00136 Cla-Chr7:1555244 0 wgd
Cla06g00721 Cla-Chr6:9209585 Cla07g00136 Cla-Chr7:1555244 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00136 K03320 - csv:101223077 906.36